Skip to content

Commit c87e457

Browse files
committed
Final options in collapsible sections.
1 parent 3aaa478 commit c87e457

2 files changed

Lines changed: 21 additions & 19 deletions

File tree

docs/includes/payu.md

Lines changed: 0 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -554,6 +554,4 @@ qsub_flags: -W umask=027
554554
## Edit a model components' configuration
555555

556556
To modify the physics used by a model component, the input data or the model variables saved in the output, you will need to modify the model component's configuration files. These are located inside a subfolder of the _control_ directory, named according to the submodel's `name` specified in the `config.yaml` `submodels` section.
557-
558-
For more details about these options, please refer to the [configurations documentation]({{configs_docs}}).
559557
<!--end:payu-component-configuration-->

docs/models/run_a_model/run_access-esm.md

Lines changed: 21 additions & 17 deletions
Original file line numberDiff line numberDiff line change
@@ -283,26 +283,30 @@ Restart files are typically tiled in the same way and will also be combined toge
283283
end="<!--end:payu-component-configuration-->"
284284
%}
285285

286-
### Create a custom {{ model }} build
287-
All the executables needed to run {{ model }} are pre-built into independent configurations using _Spack_.<br>
288-
To customise {{ model }}'s build (for example to run {{ model }} with changes in the source code of one of its component), refer to [Modify and build an ACCESS model's source code](/models/build_a_model/build_source_code#{{model|lower}}).
286+
??? info "Create a custom {{ model }} build
289287

290-
### Controlling model output
291-
Selecting the variables to save from a simulation can be a balance between enabling future analysis and minimising storage requirements. The choice and frequency of variables saved by each model can be configured from within each submodel's _control_ directory.
288+
### Create a custom {{ model }} build
289+
All the executables needed to run {{ model }} are pre-built into independent configurations using _Spack_.<br>
290+
To customise {{ model }}'s build (for example to run {{ model }} with changes in the source code of one of its component), refer to [Modify and build an ACCESS model's source code](/models/build_a_model/build_source_code#{{model|lower}}).
292291

293-
Each submodel's _control_ directory contains _detailed_ and _standard_ presets for controlling the output, located in the `diagnostic_profiles` subdirectories (e.g. `~/access-esm/preindustrial+concentrations/ice/diagnostic_profiles` for the sea ice submodel). The _detailed_ profiles request a large number of variables at higher frequencies, while the _standard_ profiles restrict the output to variables more regularly used across the community. Details on the variables saved by each preset are available in [this Hive Forum topic](https://forum.access-hive.org.au/t/preset-output-profiles-for-esm1-5/3629).
292+
??? info "Controlling the diagnostics output by the model"
294293

295-
Selecting a preset output profile to use in a simulation can be done by pointing the following symbolic links to the desired profile:
296-
297-
* `STASHC` in the atmosphere _control_ directory.
298-
* `diag_table` in the ocean _control_ directory.
299-
* `ice_history.nml` in the ice _control_ directory.
300-
301-
For example, to select the _detailed_ output profile for the atmosphere:
302-
<terminal-window>
303-
<terminal-line data="input">cd ~/access-esm/preindustrial+concentrations/atmosphere</terminal-line>
304-
<terminal-line data="input">ln -sf diagnostic_profiles/STASHC_detailed STASHC</terminal-line>
305-
</terminal-window>
294+
### Controlling the diagnostics output by the model
295+
Selecting the variables to save from a simulation can be a balance between enabling future analysis and minimising storage requirements. The choice and frequency of variables saved by each model can be configured from within each submodel's _control_ directory.
296+
297+
Each submodel's _control_ directory contains _detailed_ and _standard_ presets for controlling the output, located in the `diagnostic_profiles` subdirectories (e.g. `~/access-esm/preindustrial+concentrations/ice/diagnostic_profiles` for the sea ice submodel). The _detailed_ profiles request a large number of variables at higher frequencies, while the _standard_ profiles restrict the output to variables more regularly used across the community. Details on the variables saved by each preset are available in [this Hive Forum topic](https://forum.access-hive.org.au/t/preset-output-profiles-for-esm1-5/3629).
298+
299+
Selecting a preset output profile to use in a simulation can be done by pointing the following symbolic links to the desired profile:
300+
301+
* `STASHC` in the atmosphere _control_ directory.
302+
* `diag_table` in the ocean _control_ directory.
303+
* `ice_history.nml` in the ice _control_ directory.
304+
305+
For example, to select the _detailed_ output profile for the atmosphere:
306+
<terminal-window>
307+
<terminal-line data="input">cd ~/access-esm/preindustrial+concentrations/atmosphere</terminal-line>
308+
<terminal-line data="input">ln -sf diagnostic_profiles/STASHC_detailed STASHC</terminal-line>
309+
</terminal-window>
306310

307311

308312
## Get Help

0 commit comments

Comments
 (0)