ci testing

Author: anton-seaice

.github/workflows/ci.yml

@@ -20,7 +20,7 @@ jobs:
       uses: psf/black@stable
       with:
         options: "--check --verbose --diff"
-        
+
 
   test:
     needs: formatting
@@ -34,39 +34,16 @@ jobs:
 
     steps:
     - uses: actions/checkout@v6
-    - run: pwd
-    - run: ls -R
     - name: Setup conda environment
       uses: conda-incubator/setup-miniconda@v4
       with:
-        # miniconda-version: "latest"
         python-version: ${{ matrix.python-version }}
         activate-environment: om3-scripts-test
         environment-file: test/test_env.yaml
-        # auto-activate: false
-    # - name: Set up Python ${{ matrix.python-version }}
-    #   uses: actions/setup-python@v3
-    #   with:
-    #     python-version: ${{ matrix.python-version }}
-    # - name: Install sys dependencies
-    #   run: |
-    #     sudo apt-get update
-    #     sudo apt-get -y install nco
-    #     sudo apt-get -y install ncal
-    # - name: Install python dependencies
-    #   run: |
-    #     python -m pip install --upgrade pip
-    #     pip install -r test/test_requirements.txt
     - name: List installed packages
       run: |
         conda env list
         conda list
-    - run: which python
-    - run: which python3
     - name: Test with pytest
       run: |
         python -m pytest -m "not broken" -v -s
-    # - name: Upload coverage reports to Codecov with GitHub Action
-    #   uses: codecov/codecov-action@v3
-    #   env:
-    #     CODEOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

test/test_env.yaml

@@ -5,17 +5,16 @@ channels:
   - defaults
 dependencies:
   - esmpy
-  # - nco
   - pip
   - pytest
+  - numpy<2
+  - xarray
+  - pandas
+  - netCDF4<1.7
+  - dask
+  - access-nri-intake
+  - setuptools
+  - ruamel.yaml
+  - scikit-learn
   - pip:
     - ocean_model_grid_generator@git+https://github.com/ACCESS-NRI/ocean_model_grid_generator@d17ee7af8d5690153dc54d9c55077de5e21b2211
-    - numpy<2
-    - xarray
-    - pandas
-    - netCDF4<1.7
-    - dask
-    - access-nri-intake
-    - setuptools
-    - ruamel.yaml
-    - scikit-learn