Require Python 3.11

https://numpy.org/neps/nep-0029-deprecation_policy.html#drop-schedule

Author: dweindl

.github/workflows/test_pypi.yml

@@ -11,7 +11,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.10", "3.11", "3.12"]
+        python-version: ["3.11", "3.12", "3.13"]
         os: [ubuntu-24.04, macos-latest]
 
     runs-on: ${{ matrix.os }}

.github/workflows/test_python_cplusplus.yml

@@ -122,7 +122,7 @@ jobs:
 
     strategy:
       matrix:
-        python-version: [ "3.10" ]
+        python-version: [ "3.11" ]
 
     steps:
     - name: Set up Python ${{ matrix.python-version }}

.github/workflows/test_python_ver_matrix.yml

@@ -26,8 +26,6 @@ jobs:
       fail-fast: false
       matrix:
         include:
-          - python-version: '3.10'
-            experimental: false
           - python-version: '3.11'
             experimental: false
           - python-version: '3.12'

doc/MATLAB_.md

@@ -191,7 +191,7 @@ from within Matlab. This not quite comfortable yet, but it is possible.
 Here for proof of concept:
 
 * Install the python package as described in the documentation
-* Ensure `pyversion` shows the correct python version (>= 3.10)
+* Ensure `pyversion` shows the correct python version (>= 3.11)
 * Then, from within the AMICI `matlab/` directory:
 
     ```

doc/gfx/amici_workflow.png

@@ -8,7 +8,7 @@ Short guide
 
 Installation of the AMICI Python package has the following prerequisites:
 
-* Python>=3.10
+* Python>=3.11
 * :term:`SWIG`>=4.1
 * CBLAS compatible BLAS library
   (e.g., OpenBLAS, CBLAS, Atlas, Accelerate, Intel MKL)

doc/gfx/amici_workflow.svg

@@ -75,7 +75,7 @@ def get_extension() -> CMakeExtension:
     ext_modules=[MODEL_EXT],
     packages=find_namespace_packages(),
     install_requires=["amici==TPL_AMICI_VERSION"],
-    python_requires=">=3.10",
+    python_requires=">=3.11",
     package_data={},
     zip_safe=False,
     classifiers=CLASSIFIERS,

doc/python_installation.rst

@@ -13,11 +13,10 @@ build-backend = "setuptools.build_meta"
 name = "amici"
 dynamic = ["version"]
 description = "Advanced multi-language Interface to CVODES and IDAS"
-requires-python = ">=3.10"
+requires-python = ">=3.11"
 dependencies = [
     "cmake-build-extension==0.6.0",
     "sympy>=1.12.1",
-    "numpy>=1.21.4; python_version>='3.10'",
     "numpy>=1.23.2; python_version=='3.11'",
     "numpy>=1.26.2; python_version=='3.12'",
     "numpy; python_version>='3.13'",