Add gradient checks for SBML test suite

[dilpath]

No description provided.

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 80.32%. Comparing base (8469a18) to head (7bdb35c).
⚠️ Report is 274 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #2093      +/-   ##
==========================================
+ Coverage   80.30%   80.32%   +0.02%     
==========================================
  Files         328      328              
  Lines       22365    22365              
  Branches     1512     1512              
==========================================
+ Hits        17960    17965       +5     
+ Misses       4394     4389       -5     
  Partials       11       11              

Flag	Coverage Δ
cpp	75.43% <ø> (ø)
cpp_python	33.85% <ø> (ø)
petab	39.34% <ø> (ø)
python	74.49% <ø> (+0.02%)	⬆️
sbmlsuite-jax	34.14% <ø> (ø)

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see 2 files with indirect coverage changes

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

[dweindl]

TODO:

• FAILED tests/testSBMLSuite.py::test_sbml_testsuite_case[2] - UserWarning: Point has no component in this direction. Set ``Computer.relative_size=False`` to avoid this. Using default small step size ``fiddy.EPSILON``: 1e-05
• FAILED tests/testSBMLSuite.py::test_sbml_testsuite_case[51] - RuntimeWarning: Mean of empty slice
• FAILED tests/testSBMLSuite.py::test_sbml_testsuite_case[164] - ValueError: cannot reshape array of size 2 into shape (51,2,2)
• FAILED tests/testSBMLSuite.py::test_sbml_testsuite_case[198] - ValueError: all input arrays must have the same shape
• For now, skip gradient checks for all models that require further hyperparameter tuning

[sonarqubecloud]

Quality Gate passed

Issues
6 New issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarCloud

[sonarqubecloud]

Quality Gate passed

Issues
5 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud