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Release 0.31.2#2690

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dweindl merged 13 commits intomasterfrom
release_0.31.2
Apr 23, 2025
Merged

Release 0.31.2#2690
dweindl merged 13 commits intomasterfrom
release_0.31.2

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@dweindl dweindl commented Apr 23, 2025

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dweindl and others added 13 commits March 24, 2025 19:53
@dweindl
GHA: Don't run cron jobs on forks (#2669)
090e022
@dweindl
Fix Matlab documentation build with CMake 4.0 (#2676)
8eb7770 
Closes #2675.
@dweindl
Update pytest warning ignores
f46429a
@dweindl
Fix missing final EOL in generated header files
661ed50
@dweindl
Temporarily require interpax<=0.3.6 (#2678)
943d004 
To prevent CI failures. See #2672.
@dweindl
Update OpenBLAS to work with CMake>=4 (#2679)
48d21bd 
The previously used version failed configuring with CMake>=4.
@dweindl
Import libsbml as libsbml (#2680)
c6916d8 
Previously this was `sbml`, which was confusing because the global `sbml` was libsbml, and `SBMLImporter.sbml` was `libsbml.Model`.
Now it's also consistent across modules.
@dweindl
doc: docstring style (#2682)
0e4ea68 
Update expected docstring format.
@dweindl
doc: fix paths, formatting, typos (#2674)
ec55af6
@dweindl
SBML import: Handle unsolvable event triggers (#2686)
e588a9f 
Not all event trigger functions can be solved for `time` when trying to compute the trigger time.
Handle sympy errors in that case.
@dweindl @FFroehlich
Update docstrings and annotations for sympy observables/sigmas (#2683)
b67f5f7 
Update docstrings and annotations for sympy observables/sigmas. Related to #2568.

Co-authored-by: Fabian Fröhlich <fabian.frohlich@crick.ac.uk>
@FFroehlich
fix #2687 (#2688)
a313277
@dweindl
Prepare release 0.31.2
f2f081e
@dweindl dweindl requested a review from a team as a code owner April 23, 2025 08:48
@dweindl dweindl mentioned this pull request Apr 23, 2025
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codecov Bot commented Apr 23, 2025 •
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Codecov Report

Attention: Patch coverage is 92.85714% with 3 lines in your changes missing coverage. Please review.

Project coverage is 78.01%. Comparing base (4cda6c7) to head (f2f081e).
Report is 83 commits behind head on master.

Files with missing lines Patch % Lines
python/sdist/amici/sbml_import.py 92.10% 3 Missing ⚠️
Additional details and impacted files

Impacted file tree graph

@@            Coverage Diff             @@
##           master    #2690      +/-   ##
==========================================
+ Coverage   77.83%   78.01%   +0.18%     
==========================================
  Files         332      332              
  Lines       22994    23001       +7     
  Branches     1480     1480              
==========================================
+ Hits        17897    17944      +47     
+ Misses       5086     5046      -40     
  Partials       11       11
Flag Coverage Δ
cpp 77.18% <87.80%> (+2.41%) ⬆️
cpp_python 33.61% <73.17%> (-0.01%) ⬇️
petab 39.41% <65.85%> (-0.02%) ⬇️
python 73.05% <92.85%> (+0.18%) ⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines Coverage Δ
python/sdist/amici/de_export.py 95.35% <100.00%> (+0.01%) ⬆️
src/misc.cpp 68.31% <100.00%> (+0.31%) ⬆️
python/sdist/amici/sbml_import.py 79.61% <92.10%> (+0.19%) ⬆️

... and 4 files with indirect coverage changes

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sonarqubecloud Bot commented Apr 23, 2025

Quality Gate Passed Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud

@dweindl dweindl merged commit a87058e into master Apr 23, 2025
54 checks passed
@dweindl dweindl deleted the release_0.31.2 branch April 23, 2025 10:14
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