Update artemis.rst

Author: tyh0123

Docs/source/install/artemis.rst

@@ -27,19 +27,19 @@ Installation
 
       git clone git@github.com:AMReX-Microelectronics/artemis.git
 
-   Make sure `amrex/` and `artemis/` are placed alongside each other in your filesystem.
+   Make sure ``amrex/`` and ``artemis/`` are placed alongside each other in your filesystem.
 
 3. **Build ARTEMIS**:
 
-   1. Navigate to the `Exec/` folder inside `artemis/`.
-   2. Build with `make -j 4`, for example:
+   1. Navigate to the ``Exec/`` folder inside ``artemis/``.
+   2. Build with ``make -j 4``, for example:
 
    .. code-block:: bash
 
       cd artemis/Exec/
       make -j 4
 
-   By default, *LLG* is enabled (`USE_LLG = TRUE`). You can explicitly switch it on/off:
+   By default, *LLG* is enabled (``USE_LLG = TRUE``). You can explicitly switch it on/off:
 
    - **Without LLG**:
 
@@ -53,55 +53,12 @@ Installation
 
         make -j 4 USE_LLG=TRUE
 
-   To enable GPU acceleration (CUDA/HIP, etc.) set `USE_GPU=TRUE` in the make command. Check the `GNUmakefile` or other build scripts for additional optional flags like MPI, OpenMP, etc.
-
-Running ARTEMIS
----------------
-
-**Example Input Scripts** reside in the `Examples/` directory. Below are a couple of quick start demonstrations.
-
-.. _artemis-no-llg:
-
-1. **Simple Testcase without LLG**
-
-   For an air-filled X-band rectangular waveguide simulation:
-
-   - *MPI + OpenMP Build*:
-
-     .. code-block:: bash
-
-        make -j 4 USE_LLG=FALSE
-        mpirun -n 4 ./main3d.gnu.TPROF.MTMPI.OMP.GPUCLOCK.ex Examples/Waveguide/inputs_3d_empty_X_band
-
-   - *MPI + CUDA Build*:
-
-     .. code-block:: bash
-
-        make -j 4 USE_LLG=FALSE USE_GPU=TRUE
-        mpirun -n 4 ./main3d.gnu.TPROF.MTMPI.CUDA.GPUCLOCK.ex Examples/Waveguide/inputs_3d_empty_X_band
-
-2. **Simple Testcase with LLG**
-
-   For an X-band magnetically tunable filter simulation:
-
-   - *MPI + OpenMP Build*:
-
-     .. code-block:: bash
-
-        make -j 4 USE_LLG=TRUE
-        mpirun -n 8 ./main3d.gnu.TPROF.MTMPI.OMP.GPUCLOCK.ex Examples/Waveguide/inputs_3d_LLG_filter
-
-   - *MPI + CUDA Build*:
-
-     .. code-block:: bash
-
-        make -j 4 USE_LLG=TRUE USE_GPU=TRUE
-        mpirun -n 8 ./main3d.gnu.TPROF.MTMPI.CUDA.GPUCLOCK.ex Examples/Waveguide/inputs_3d_LLG_filter
+   To enable GPU acceleration (e.g., CUDA), set ``USE_GPU=TRUE`` in the make command. Check the ``GNUmakefile`` or other build scripts for additional optional flags like MPI, OpenMP, etc.
 
 Visualization and Data Analysis
 -------------------------------
 
-ARTEMIS uses the AMReX I/O format for storing simulation results. You can use tools such as `VisIt`, `ParaView`, or other readers compatible with AMReX plotfiles. 
+ARTEMIS uses the AMReX I/O format for storing simulation results. You can use tools such as `VisIt <https://wci.llnl.gov/simulation/computer-codes/visit>`_, `ParaView <https://www.paraview.org/>`_, or other readers compatible with AMReX plotfiles.
 
 Additionally, `yt <https://yt-project.org/>`_ can be used in Python to load the data for advanced post-processing:
 
@@ -115,15 +72,15 @@ Additionally, `yt <https://yt-project.org/>`_ can be used in Python to load the
 Publications
 ------------
 
-- **Z. Yao, R. Jambunathan, Y. Zeng and A. Nonaka**,
+- **Z. Yao, R. Jambunathan, Y. Zeng, and A. Nonaka**,
   A massively parallel time-domain coupled electrodynamics–micromagnetics solver.
   *The International Journal of High Performance Computing Applications*, 2022;36(2):167-181.
   `doi:10.1177/10943420211057906 <https://doi.org/10.1177/10943420211057906>`_
 
-- **S. S. Sawant, Z. Yao, R. Jambunathan and A. Nonaka**,
+- **S. S. Sawant, Z. Yao, R. Jambunathan, and A. Nonaka**,
   Characterization of transmission lines in microelectronic circuits using the ARTEMIS solver,
   *IEEE Journal on Multiscale and Multiphysics Computational Techniques*, vol. 8, pp. 31-39, 2023,
-  `doi: 10.1109/JMMCT.2022.3228281 <https://doi.org/10.1109/JMMCT.2022.3228281>`_
+  `doi:10.1109/JMMCT.2022.3228281 <https://doi.org/10.1109/JMMCT.2022.3228281>`_
 
 - **R. Jambunathan, Z. Yao, R. Lombardini, A. Rodriguez, and A. Nonaka**,
   Two-fluid physical modeling of superconducting resonators in the ARTEMIS framework,