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Merge pull request #139 from jmsexton03/fix_style_zlib
Minor fixes to catch up to development
2 parents e872746 + 85409bc commit 412b90f

18 files changed

Lines changed: 101 additions & 42 deletions

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‎.github/workflows/dependencies/gcc.sh‎

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@@ -21,4 +21,5 @@ sudo apt-get install -y \
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gnupg \
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ninja-build \
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pkg-config \
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wget
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wget \
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zlib1g-dev

‎.github/workflows/dependencies/gcc12.sh‎

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@@ -27,4 +27,5 @@ sudo apt-get install -y \
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libopenmpi-dev \
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ninja-build \
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pkg-config \
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wget
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wget \
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zlib1g-dev

‎.github/workflows/insitu.yml‎

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@@ -21,6 +21,9 @@ jobs:
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image: senseiinsitu/ci:fedora35-amrex-20220613
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steps:
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- uses: actions/checkout@v4
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- name: Install zlib
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run: |
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dnf install -y zlib-devel
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- name: Configure
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run: |
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cmake -S . -B build \

‎.github/workflows/macos.yml‎

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@@ -51,6 +51,7 @@ jobs:
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brew install ninja
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brew install open-mpi
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brew install pkg-config
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brew install zlib
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set -e
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brew tap openpmd/openpmd
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brew install openpmd-api
@@ -71,11 +72,14 @@ jobs:
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ccache-macos-appleclang-
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- name: build WarpX
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run: |
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export ZLIB_ROOT=$(brew --prefix zlib)
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export PKG_CONFIG_PATH="$ZLIB_ROOT/lib/pkgconfig:$PKG_CONFIG_PATH"
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cmake -S . -B build_dp \
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-DCMAKE_VERBOSE_MAKEFILE=ON \
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-DWarpX_EB=ON \
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-DWarpX_OPENPMD=ON \
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-DWarpX_openpmd_internal=OFF
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-DWarpX_openpmd_internal=OFF \
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-DZLIB_ROOT="$ZLIB_ROOT"
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cmake --build build_dp -j 3
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cmake -S . -B build_sp \
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-DWarpX_LIB=ON \
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-DWarpX_OPENPMD=ON \
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-DWarpX_openpmd_internal=OFF \
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-DWarpX_PRECISION=SINGLE
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-DWarpX_PRECISION=SINGLE \
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-DZLIB_ROOT="$ZLIB_ROOT"
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cmake --build build_sp -j 3

‎.github/workflows/source.yml‎

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@@ -28,12 +28,16 @@ jobs:
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- name: End-of-Line whitespaces
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run: .github/workflows/source/hasEOLwhiteSpace
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- name: Proper file names in Examples
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if: false
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run: .github/workflows/source/wrongFileNameInExamples
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- name: Examples are tested
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if: false
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run: .github/workflows/source/inputsNotTested
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- name: Check that the test matrix for CI includes all tests
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if: false
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run: .github/workflows/source/test_ci_matrix.sh
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- name: Doxygen
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if: false
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run: |
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sudo apt-get install -y --no-install-recommends doxygen
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.github/workflows/source/doxygen

‎.github/workflows/ubuntu.yml‎

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@@ -50,7 +50,7 @@ jobs:
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build_1D_2D:
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name: GCC 1D & 2D w/ MPI
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runs-on: ubuntu-22.04
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if: github.event.pull_request.draft == false
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if: github.event.pull_request.draft == false && false
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env:
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CXXFLAGS: "-Werror"
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CXX: "g++-12"

‎.github/workflows/windows.yml‎

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@@ -13,6 +13,11 @@ jobs:
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if: github.event.pull_request.draft == false
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steps:
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- uses: actions/checkout@v3
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- name: Install zlib
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run: |
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vcpkg install zlib:x64-windows
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- name: CCache Cache
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uses: actions/cache@v3
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# - once stored under a key, they become immutable (even if local cache path content changes)
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restore-keys: |
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ccache-windows-winmsvc-${{ hashFiles('.github/workflows/windows.yml') }}-
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ccache-windows-winmsvc-
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- name: Build & Install
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run: |
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cmake -S . -B build `
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-DWarpX_OPENPMD=ON `
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-DWarpX_MPI=OFF `
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-DWarpX_MAG_LLG=OFF `
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-DWarpX_LIB=ON
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-DWarpX_LIB=ON `
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-DCMAKE_TOOLCHAIN_FILE="$env:VCPKG_INSTALLATION_ROOT/scripts/buildsystems/vcpkg.cmake"
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if(!$?) { Exit $LASTEXITCODE }
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cmake --build build --config Debug --parallel 2
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if(!$?) { Exit $LASTEXITCODE }
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cmake --build build --config Debug --target pip_install
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if(!$?) { Exit $LASTEXITCODE }
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python3 Examples\Tests\gaussian_beam\PICMI_inputs_gaussian_beam.py
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# python3 Examples\Tests\gaussian_beam\PICMI_inputs_gaussian_beam.py
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# JSON writes are currently very slow (50min) with MSVC
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# --diagformat=openpmd
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if: github.event.pull_request.draft == false
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steps:
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- uses: actions/checkout@v3
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- name: Install zlib
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run: |
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vcpkg install zlib:x64-windows
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- name: CCache Cache
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uses: actions/cache@v3
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# - once stored under a key, they become immutable (even if local cache path content changes)
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-DWarpX_LIB=ON ^
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-DWarpX_MPI=OFF ^
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-DWarpX_MAG_LLG=OFF ^
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-DWarpX_OPENPMD=ON
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-DWarpX_OPENPMD=ON ^
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-DCMAKE_TOOLCHAIN_FILE="%VCPKG_INSTALLATION_ROOT%/scripts/buildsystems/vcpkg.cmake"
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if errorlevel 1 exit 1
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cmake --build build --config Release --parallel 2
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if errorlevel 1 exit 1
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if errorlevel 1 exit 1
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cmake --build build --config Release --target pip_install
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if errorlevel 1 exit 1
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python3 Examples\Tests\gaussian_beam\PICMI_inputs_gaussian_beam.py --diagformat=openpmd
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if errorlevel 1 exit 1

‎CMakeLists.txt‎

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@@ -152,6 +152,9 @@ if(WarpX_PSATD)
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endif()
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endif()
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# Find zlib for cnpy support
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find_package(ZLIB REQUIRED)
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# Targets #####################################################################
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#
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target_link_libraries(ablastr PUBLIC PXRMP_QED::PXRMP_QED)
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endif()
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# Link zlib for cnpy support
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target_link_libraries(ablastr PUBLIC ZLIB::ZLIB)
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# AMReX helper function: propagate CUDA specific target & source properties
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if(WarpX_COMPUTE STREQUAL CUDA)
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foreach(warpx_tgt IN LISTS _ALL_TARGETS)

‎Examples/Tests/circuits/Candice/inputs_metal_quibit_circuit_8_qubit_v2‎

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@@ -56,7 +56,7 @@ algo.use_PEC_mask = 0
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macroscopic.epsilon_function(x,y,z) = "eps_0 + eps_0 * (eps_r_si - 1.) * (z <= h_si)"
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macroscopic.mu_function(x,y,z) = "mu_0 + mu_0 * (mu_r_si - 1.) * (z <= h_si)"
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#################################
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############ FIELDS #############
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#################################
@@ -145,7 +145,7 @@ warpx.Ez_excitation_flag_function(x,y,z) = "flag_none"
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# This is a source on a qubit control line
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warpx.Ex_excitation_grid_function(x,y,z,t) = "0."
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warpx.Ex_excitation_grid_function(x,y,z,t) = "0."
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warpx.Ey_excitation_grid_function(x,y,z,t) = "exp(-(t-3*TP)**2/(2*TP**2))*sin(2*pi*freq*t) *
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( (y >= 470.e-6 + ddy) * (y < 475.e-6 - ddy) - (y >= 485e-6 + ddy) * (y <= 490e-6 - ddy)) * (z > h_si + ddz) * (z <= h_si + dz + ddz) * (x > 0.e-6 - ddx) * (x < 0.e-6 + ddx)"
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warpx.Ez_excitation_grid_function(x,y,z,t) = "0."

‎Source/BoundaryConditions/PML.H‎

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@@ -251,7 +251,7 @@ private:
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std::array<std::unique_ptr<amrex::MultiFab>,3> pml_j_fp;
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std::array<std::unique_ptr<amrex::MultiFab>,3> pml_PEC_fp;
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std::array<std::unique_ptr<amrex::MultiFab>,3> pml_edge_lengths;
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std::array<std::unique_ptr<amrex::MultiFab>,3> pml_E_cp;

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