Fix plugin manifest (#126)

* Use hyphenated napari plugin IDs

Replace underscore-separated plugin identifiers with hyphen-separated ones. Rename the manifest name to "napari-cellseg3d" and update all command IDs and widget command references in napari_cellseg3d/napari.yaml. Update pyproject.toml to register the manifest under [project.entry-points."napari.manifest"] with key "napari-cellseg3d" -> "napari_cellseg3d:napari.yaml" so the manifest and entry-point names are consistent.

* Add npe2 plugin validation to CI

Install npe2 in the test workflow and run a plugin validation step before building the package. This ensures napari_cellseg3d/napari.yaml is validated (via `python -m npe2 validate`) as part of CI to catch plugin metadata issues early.

* Update uv.lock

* Change to 0.2.4

Author: C-Achard

.github/workflows/test_and_deploy.yml

@@ -105,7 +105,11 @@ jobs:
       - name: Install build tools
         run: |
           python -m pip install --upgrade pip
-          python -m pip install build twine
+          python -m pip install build twine npe2
+
+      - name: Validate plugin
+        run: |
+          python -m npe2 validate napari_cellseg3d/napari.yaml
 
       - name: Build package
         run: |

README.md

@@ -66,9 +66,9 @@ F1-score is computed from the Intersection over Union (IoU) with ground truth la
 
 Read the [article here !](https://elifesciences.org/articles/99848)
 
-### **New version: v0.2.3**
+### **New version: v0.2.4**
 
-- v0.2.3:
+- v0.2.4:
   - Python 3.10-12 support added
   - Several fixes to deprecation errors on newer Python versions
   - Upgraded packaging to use only pyproject.toml

napari_cellseg3d/napari.yaml

@@ -1,42 +1,42 @@
-name: napari_cellseg3d
+name: napari-cellseg3d
 display_name: CellSeg3D
 schema_version: 0.0.4
 
 contributions:
   commands:
-  - id: napari_cellseg3d.load
+  - id: napari-cellseg3d.load
     title: Create reviewer
     python_name: napari_cellseg3d.plugins:Reviewer
 
-  - id: napari_cellseg3d.help
+  - id: napari-cellseg3d.help
     title: Create Help
     python_name: napari_cellseg3d.plugins:Helper
 
-  - id: napari_cellseg3d.utils
+  - id: napari-cellseg3d.utils
     title:  Create utilities
     python_name: napari_cellseg3d.plugins:Utilities
 
-  - id: napari_cellseg3d.infer
+  - id: napari-cellseg3d.infer
     title: Create Inference widget
     python_name: napari_cellseg3d.plugins:Inferer
 
-  - id: napari_cellseg3d.train
+  - id: napari-cellseg3d.train
     title: Create Trainer widget
     python_name: napari_cellseg3d.plugins:Trainer
 
 
   widgets:
-  - command: napari_cellseg3d.load
+  - command: napari-cellseg3d.load
     display_name: Labeling
 
-  - command: napari_cellseg3d.infer
+  - command: napari-cellseg3d.infer
     display_name: Inference
 
-  - command: napari_cellseg3d.train
+  - command: napari-cellseg3d.train
     display_name: Training
 
-  - command: napari_cellseg3d.utils
+  - command: napari-cellseg3d.utils
     display_name: Utilities
 
-  - command: napari_cellseg3d.help
+  - command: napari-cellseg3d.help
     display_name: Help/About...

pyproject.toml

@@ -58,8 +58,8 @@ email = "maxime.vidal@epfl.ch"
 [[project.authors]]
 name = "Mackenzie Mathis"
 email = "mackenzie@post.harvard.edu"
-[project.entry-points]
-"napari.manifest".napari_cellseg3d = "napari_cellseg3d:napari.yaml"
+[project.entry-points."napari.manifest"]
+napari-cellseg3d = "napari_cellseg3d:napari.yaml"
 [project.optional-dependencies]
 crf = [
   "pydensecrf2",