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| 1 | +{ |
| 2 | + "dataDirectory": "C:/FILL/OUT/THIS/PATH", |
| 3 | + "directoryStructure": [ |
| 4 | + "researcherName", |
| 5 | + "experimentName", |
| 6 | + "animalName", |
| 7 | + "customEntry0", |
| 8 | + "date", |
| 9 | + "time" |
| 10 | + ], |
| 11 | + "researcherName": "Dr_Miniscope", |
| 12 | + "experimentName": "Experiment0", |
| 13 | + "animalName": "Fully Ball", |
| 14 | + "customEntry0": "customEntValHere", |
| 15 | + |
| 16 | + "recordLengthinSeconds": 600, |
| 17 | + |
| 18 | + "executableOnStartRecording": { |
| 19 | + "enabled": false, |
| 20 | + "filePath": "C:/FILL/OUT/THIS/PATH.exe", |
| 21 | + "arguments": ["arg1", "arg2"] |
| 22 | + }, |
| 23 | + "executableOnStopRecording": { |
| 24 | + "enabled": false, |
| 25 | + "filePath": "C:/FILL/OUT/THIS/PATH.exe", |
| 26 | + "arguments": ["arg1", "arg2", "arg3"] |
| 27 | + }, |
| 28 | + |
| 29 | + "COMMENT_behaviorTracker": "The behavior tracker is currently in beta testing. It requires you to have a functional Python environment with DeepLabCut-Live setup.", |
| 30 | + "COMMENT_behaviorTracker2": "For info on setting up DLC-Live go here, https://github.com/DeepLabCut/DeepLabCut-live", |
| 31 | + "COMMENT_behaviorTracker3": "Currently only the type of 'DeepLabCut-Live' is supported. You need to provide an absolute path to your Pythong environment and DLC model.", |
| 32 | + "COMMENT_behaviorTracker4": "If you don't to use the behaviorTracker either remove this section or set 'enabled' to false. More info can be found in the primary user config example file.", |
| 33 | + "behaviorTracker": { |
| 34 | + "enabled": false, |
| 35 | + "type": "DeepLabCut-Live", |
| 36 | + "pyEnvPath": "C:/PATH/TO/ENV", |
| 37 | + "modelPath": "C:/PATH/TO/DLC/MODEL", |
| 38 | + "resize": 0.5, |
| 39 | + "pCutoffDisplay": 0.3, |
| 40 | + "windowX": 200, |
| 41 | + "windowY": 100, |
| 42 | + "windowScale": 0.75, |
| 43 | + "occupancyPlot": { |
| 44 | + "enabled": true, |
| 45 | + "numBinsX": 100, |
| 46 | + "numBinsY": 100, |
| 47 | + "poseIdxToUse": [0, 1, 2, 3, 4] |
| 48 | + }, |
| 49 | + |
| 50 | + "poseIdxForTraceDisplay": ["0wh", "1w", "2w"], |
| 51 | + |
| 52 | + "poseOverlay": { |
| 53 | + "enabled": true, |
| 54 | + "COMMENT": "Cant be 'point','line',or 'ribbon.", |
| 55 | + "type": "point", |
| 56 | + "numOfPastPoses": 6, |
| 57 | + "markerSize": 20, |
| 58 | + "skeleton": { |
| 59 | + "enabled": true, |
| 60 | + "connectedIndices": [ |
| 61 | + [0, 1, 2, 3, 4, 5], |
| 62 | + [6, 7, 8, 9, 10, 11], |
| 63 | + [12, 13] |
| 64 | + ] |
| 65 | + } |
| 66 | + } |
| 67 | + }, |
| 68 | + |
| 69 | + "traceDisplay": { |
| 70 | + "enabled": true, |
| 71 | + "type": "scrolling", |
| 72 | + "windowX": 100, |
| 73 | + "windowY": 100, |
| 74 | + "windowWidth": 600, |
| 75 | + "windowHeight": 800 |
| 76 | + }, |
| 77 | + |
| 78 | + "devices": { |
| 79 | + "miniscopes": { |
| 80 | + "My V4 Miniscope": { |
| 81 | + "deviceType": "Miniscope_V4_BNO", |
| 82 | + "headOrientation": { |
| 83 | + "enabled": true, |
| 84 | + "filterBadData": true, |
| 85 | + "plotTrace": ["roll", "pitch", "yaw"] |
| 86 | + }, |
| 87 | + "COMMENT": "Change the deviceID to match the input number of your Miniscope.", |
| 88 | + "deviceID": 1, |
| 89 | + "showSaturation": true, |
| 90 | + "ROI": { |
| 91 | + "leftEdge": 0, |
| 92 | + "topEdge": 0, |
| 93 | + "width": 600, |
| 94 | + "height": 600 |
| 95 | + }, |
| 96 | + "compression": "FFV1", |
| 97 | + "framesPerFile": 1000, |
| 98 | + "windowScale": 0.75, |
| 99 | + "windowX": 800, |
| 100 | + "windowY": 100, |
| 101 | + "gain": "Low", |
| 102 | + "ewl": 50, |
| 103 | + "led0": 10, |
| 104 | + "frameRate": "20FPS" |
| 105 | + } |
| 106 | + }, |
| 107 | + "cameras": { |
| 108 | + "My First WebCam":{ |
| 109 | + "deviceType": "WebCam", |
| 110 | + "deviceID": 0, |
| 111 | + "showSaturation": true, |
| 112 | + "ROI": { |
| 113 | + "leftEdge": 0, |
| 114 | + "topEdge": 0, |
| 115 | + "width": 640, |
| 116 | + "height": 480 |
| 117 | + }, |
| 118 | + "compression": "MJPG", |
| 119 | + "framesPerFile": 1000, |
| 120 | + "windowScale": 0.5, |
| 121 | + "windowX": 800, |
| 122 | + "windowY": 600 |
| 123 | + }, |
| 124 | + "My Second WebCam":{ |
| 125 | + "deviceType": "Minicam-Mono-XGA", |
| 126 | + "deviceID": 2, |
| 127 | + "showSaturation": true, |
| 128 | + "ROI": { |
| 129 | + "leftEdge": 0, |
| 130 | + "topEdge": 0, |
| 131 | + "width": 640, |
| 132 | + "height": 480 |
| 133 | + }, |
| 134 | + "compression": "MJPG", |
| 135 | + "framesPerFile": 1000, |
| 136 | + "windowScale": 0.5, |
| 137 | + "windowX": 800, |
| 138 | + "windowY": 600 |
| 139 | + } |
| 140 | + } |
| 141 | + } |
| 142 | +} |
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