Add files via upload

Author: exploding-duck

mousearm/getMuscleLengths.py

@@ -0,0 +1,36 @@
+import opensim as osim
+import os as os
+import glob
+import shutil
+
+def runFiberReport(path_to_model, path_to_sto, storage_path):
+    analyze = osim.AnalyzeTool()
+    analyze.setName("analyze")
+    analyze.setModelFilename(path_to_model)
+    analyze.setStatesFileName(path_to_sto)
+    analyze.updAnalysisSet().cloneAndAppend(osim.MuscleAnalysis())
+    analyze.updControllerSet().cloneAndAppend(
+    osim.PrescribedController(path_to_sto))
+    analyze.printToXML(storage_path)
+    analyze = osim.AnalyzeTool(storage_path)
+    analyze.run()
+
+rset_name = "reachset_1/" # change this accordingly
+reach_dir= "C:\\Users\\matte\\Downloads\\MouseArmProject_v1_0\\analysis_and_processing_scripts\\sim scripts\\data\\Predicted EMG\\Test Reaches\\reachset_1" # change to your path
+base_dir = "C:\\Users\\matte\\Downloads\\MouseArmProject_v1_0\\analysis_and_processing_scripts\\sim scripts\\data\\Predicted EMG\\Test Reaches\\" # change to your path
+model_path = "C:\\Users\\matte\\Downloads\\MouseArmProject_v1_0\\model\\model_toScale.osim" # change to your path
+for g2 in glob.glob(reach_dir+"//muscle_solution_*"):
+    print(g2)
+    gend = g2.split("_")
+    gend = gend[-1]
+    gend = gend.split(".")
+    gend = gend[0]
+    s2 = str(g2).replace(".sto",".xml").replace("muscle_solution","fiber_results")
+    print(s2)
+    runFiberReport(model_path, g2,s2) 
+
+    for ana in glob.glob(base_dir+"*"): 
+        if "analyze" in ana:
+            ana2 = str(ana).replace("analyze_MuscleAnalysis_",rset_name).replace(".sto","_"+str(gend)+".sto").replace("\\","/")
+            shutil.copy(ana, ana2)
+            print(ana,ana2)