Currently, our testing and stub profiles only use project SCPCP000012:
|
project = "SCPCP000012" // a small project |
This is fine for modules that run on all (or no) samples, but it also means that modules that are specific to a project aren't getting fully run during testing. Currently this includes cell-type-ewings and (the in-progress module which is how I noticed this) cell-type-neuroblastoma-04.
We could either add these two projects (SCPCP000015 and SCPCP000004) into the profiles, or figure out a different approach to ensure we are testing all components of all modules, e.g. implementing a way to pass in samples or so.
Currently, our
testingandstubprofiles only use projectSCPCP000012:OpenScPCA-nf/nextflow.config
Line 78 in 09a9699
OpenScPCA-nf/nextflow.config
Line 114 in 09a9699
This is fine for modules that run on all (or no) samples, but it also means that modules that are specific to a project aren't getting fully run during testing. Currently this includes
cell-type-ewingsand (the in-progress module which is how I noticed this)cell-type-neuroblastoma-04.We could either add these two projects (
SCPCP000015andSCPCP000004) into the profiles, or figure out a different approach to ensure we are testing all components of all modules, e.g. implementing a way to pass in samples or so.