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Identify a CNV inference method to use for annotating tumor and normal cells

Status: Open.

#222 In AlexsLemonade/sc-data-integration;

· jashapiro opened on Jun 15, 2023

Future thought: Explore disagreements between references

Status: Open.

#220 In AlexsLemonade/sc-data-integration;

· allyhawkins opened on May 26, 2023

Consider removing occurrences of aes_string()

Status: Open.

#212 In AlexsLemonade/sc-data-integration;

· sjspielman opened on Apr 4, 2023

Permute celldex ref labels and compare true cell assignment to distribution of assignments

Status: Open.

#208 In AlexsLemonade/sc-data-integration;

· allyhawkins opened on Mar 22, 2023

seurat integration investigation

Status: Open.

#198 In AlexsLemonade/sc-data-integration;

· sjspielman opened on Dec 7, 2022

Bump Seurat to 4.2

Status: Open.

#197 In AlexsLemonade/sc-data-integration;

· sjspielman opened on Nov 6, 2022

Make setup_envs.sh work without input files

Status: Open.

#166 In AlexsLemonade/sc-data-integration;

· jashapiro opened on Sep 27, 2022

Create a menu of scpca projects to be considered for integration

Status: Open.

#159 In AlexsLemonade/sc-data-integration;

· allyhawkins opened on Sep 26, 2022

Consider adding s metric from kBET paper

Status: Open.

#114 In AlexsLemonade/sc-data-integration;

· sjspielman opened on Aug 25, 2022

Consider using cell types to determine k for batch ARI k-means

Status: Open.

#103 In AlexsLemonade/sc-data-integration;

· sjspielman opened on Aug 18, 2022

Function to calculate IDER-based metric

Status: Open.

#88 In AlexsLemonade/sc-data-integration;

· sjspielman opened on Aug 9, 2022

Function for integrating datasets using scANVI

Status: Open.

#17 In AlexsLemonade/sc-data-integration;

· allyhawkins opened on Jun 16, 2022