The annotations for the Janesick BRCA data we are going to use for neighborhood analysis are in the 4th sheet of an excel file here: https://cdn.10xgenomics.com/raw/upload/v1695234604/Xenium%20Preview%20Data/Cell_Barcode_Type_Matrices.xlsx
We could just grab them in the instruction notebook directly using openxlsx, but I think it might be easier if we just do some minor prep to grab what we need to save as a TSV file in the training-modules folder for participants to read in during instruction.
The annotations for the Janesick BRCA data we are going to use for neighborhood analysis are in the 4th sheet of an excel file here: https://cdn.10xgenomics.com/raw/upload/v1695234604/Xenium%20Preview%20Data/Cell_Barcode_Type_Matrices.xlsx
We could just grab them in the instruction notebook directly using
openxlsx, but I think it might be easier if we just do some minor prep to grab what we need to save as a TSV file in thetraining-modulesfolder for participants to read in during instruction.