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Merged
t-b merged 3 commits into from
Jul 5, 2026
Merged

tools/nwb-read-tests: Update to latest versions #2733

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ded0792
Packages/doc/developers.rst: Prefer uv
t-b Jul 3, 2026
fa04cd6
tools/nwb-read-tests: Update to latest versions
t-b Jul 2, 2026
41dd77a
tools: Regenerate requirements.txt
t-b Jul 3, 2026
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6 changes: 2 additions & 4 deletions Packages/doc/developers.rst
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Original file line number Diff line number Diff line change
Expand Up @@ -49,11 +49,9 @@ These files are generated from requirements.in via

.. code:: text

pip-compile --upgrade --generate-hashes --output-file=requirements.txt --strip-extras requirements.in
uv pip compile --python-version 3.11 --generate-hashes --universal requirements.in --output-file requirements.txt

Therefore updates should be done directly in requirements.in and then calling pip-compile. The platform/OS
needs to be the same when generating the requirements.txt and running them. We currently run all python code
in debian bookworm docker containers. On Windows you can get a debian bookworm with WSL.
Therefore updates should be done in requirements.in only as requirements.txt is completely generated.

Linting
-------
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12 changes: 6 additions & 6 deletions tools/documentation/requirements.txt
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@@ -1,9 +1,5 @@
#
# This file is autogenerated by pip-compile with Python 3.11
# by the following command:
#
# pip-compile --generate-hashes --output-file=requirements.txt --strip-extras requirements.in
#
# This file was autogenerated by uv via the following command:
# uv pip compile --python-version 3.11 --generate-hashes --universal requirements.in --output-file requirements.txt
alabaster==0.7.16 \
--hash=sha256:75a8b99c28a5dad50dd7f8ccdd447a121ddb3892da9e53d1ca5cca3106d58d65 \
--hash=sha256:b46733c07dce03ae4e150330b975c75737fa60f0a7c591b6c8bf4928a28e2c92
Expand Down Expand Up @@ -112,6 +108,10 @@ charset-normalizer==3.3.2 \
--hash=sha256:fd1abc0d89e30cc4e02e4064dc67fcc51bd941eb395c502aac3ec19fab46b519 \
--hash=sha256:ff8fa367d09b717b2a17a052544193ad76cd49979c805768879cb63d9ca50561
# via requests
colorama==0.4.6 ; sys_platform == 'win32' \
--hash=sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44 \
--hash=sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6
# via sphinx
docutils==0.21.2 \
--hash=sha256:3a6b18732edf182daa3cd12775bbb338cf5691468f91eeeb109deff6ebfa986f \
--hash=sha256:dafca5b9e384f0e419294eb4d2ff9fa826435bf15f15b7bd45723e8ad76811b2
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5 changes: 2 additions & 3 deletions tools/nwb-read-tests/requirements.in
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@@ -1,3 +1,2 @@
# needs to be pip-compile'd on debian bookworm
pynwb==3.1.0
dandi==0.67.0
pynwb==4.0.0
dandi==0.76.5
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