Description of additional devices
| Field | Type | Title (Description) |
|---|---|---|
imaging_device_type |
ImagingDeviceType | Device type |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Description of an air puff device
| Field | Type | Title (Description) |
|---|---|---|
diameter |
float |
Spout diameter |
diameter_unit |
SizeUnit | Size unit |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Description of a rectangular arena
| Field | Type | Title (Description) |
|---|---|---|
size |
Scale | 3D Size |
size_unit |
SizeUnit | Size unit |
objects_in_arena |
List[Device] | Objects in arena |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Camera Detector
| Field | Type | Title (Description) |
|---|---|---|
detector_type |
DetectorType | |
manufacturer |
Organization | |
data_interface |
DataInterface | Data interface |
cooling |
Cooling | Cooling |
frame_rate |
Optional[decimal.Decimal] |
Frame rate (Hz) (Frame rate being used) |
frame_rate_unit |
Optional[FrequencyUnit] | Frame rate unit |
immersion |
Optional[ImmersionMedium] | Immersion |
chroma |
Optional[CameraChroma] | Camera chroma |
sensor_width |
Optional[int] |
Width of the sensor (pixels) |
sensor_height |
Optional[int] |
Height of the sensor (pixels) |
size_unit |
SizeUnit | Size unit |
sensor_format |
Optional[str] |
Sensor format |
sensor_format_unit |
Optional[str] |
Sensor format unit |
bit_depth |
Optional[int] |
Bit depth |
bin_mode |
BinMode | Detector binning mode |
bin_width |
Optional[int] |
Bin width |
bin_height |
Optional[int] |
Bin height |
bin_unit |
SizeUnit | Bin size unit |
gain |
Optional[decimal.Decimal] |
Gain |
crop_offset_x |
Optional[int] |
Crop offset x |
crop_offset_y |
Optional[int] |
Crop offset y |
crop_width |
Optional[int] |
Crop width |
crop_height |
Optional[int] |
Crop width |
crop_unit |
SizeUnit | Crop size unit |
recording_software |
Optional[Software] | Recording software |
driver |
Optional[DeviceDriver] | Driver |
driver_version |
Optional[str] |
Driver version |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Named assembly of a camera and lens (and optionally a filter)
| Field | Type | Title (Description) |
|---|---|---|
name |
str |
Camera assembly name |
target |
CameraTarget | Camera target |
camera |
Camera | Camera |
lens |
Lens | Lens |
filter |
Optional[Filter] | Filter |
relative_position |
List[AnatomicalRelative] | Relative position |
coordinate_system |
Optional[CoordinateSystem] | Device coordinate system |
transform |
Optional[List[Translation or Rotation or Scale or Affine]] | Device to instrument transform (Position and orientation of the device in the instrument coordinate system) |
Description of a catheter device
| Field | Type | Title (Description) |
|---|---|---|
catheter_material |
CatheterMaterial | Catheter material |
catheter_design |
CatheterDesign | Catheter design |
catheter_port |
CatheterPort | Catheter port |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Type of catheter design
| Name | Value |
|---|---|
MAGNETIC |
Magnetic |
NONMAGNETIC |
Non-magnetic |
NA |
N/A |
Type of catheter material
| Name | Value |
|---|---|
NAKED |
Naked |
SILICONE |
VAB silicone |
MESH |
VAB mesh |
Type of catheter port
| Name | Value |
|---|---|
SINGLE |
Single |
DOUBLE |
Double |
Description of a computer
| Field | Type | Title (Description) |
|---|---|---|
operating_system |
Optional[str] |
Operating system |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Named input or output channel on a DAQ device
| Field | Type | Title (Description) |
|---|---|---|
channel_name |
str |
DAQ channel name |
channel_type |
DaqChannelType | DAQ channel type |
port |
Optional[int] |
DAQ port |
channel_index |
Optional[int] |
[DEPRECATED] Use DAQChannel.port instead. DAQ channel index |
sample_rate |
Optional[decimal.Decimal] |
DAQ channel sample rate (Hz) |
sample_rate_unit |
Optional[FrequencyUnit] | Sample rate unit |
event_based_sampling |
Optional[bool] |
Set to true if DAQ channel is sampled at irregular intervals |
Data acquisition device containing multiple I/O channels
| Field | Type | Title (Description) |
|---|---|---|
data_interface |
DataInterface | Type of connection to PC |
manufacturer |
Organization | |
channels |
List[DAQChannel] | DAQ channels |
firmware_version |
Optional[str] |
Firmware version |
hardware_version |
Optional[str] |
Hardware version |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Description of a generic detector
| Field | Type | Title (Description) |
|---|---|---|
detector_type |
DetectorType | Detector Type |
manufacturer |
Organization | |
data_interface |
DataInterface | Data interface |
cooling |
Cooling | Cooling |
frame_rate |
Optional[decimal.Decimal] |
Frame rate (Hz) (Frame rate being used) |
frame_rate_unit |
Optional[FrequencyUnit] | Frame rate unit |
immersion |
Optional[ImmersionMedium] | Immersion |
chroma |
Optional[CameraChroma] | Camera chroma |
sensor_width |
Optional[int] |
Width of the sensor (pixels) |
sensor_height |
Optional[int] |
Height of the sensor (pixels) |
size_unit |
SizeUnit | Size unit |
sensor_format |
Optional[str] |
Sensor format |
sensor_format_unit |
Optional[str] |
Sensor format unit |
bit_depth |
Optional[int] |
Bit depth |
bin_mode |
BinMode | Detector binning mode |
bin_width |
Optional[int] |
Bin width |
bin_height |
Optional[int] |
Bin height |
bin_unit |
SizeUnit | Bin size unit |
gain |
Optional[decimal.Decimal] |
Gain |
crop_offset_x |
Optional[int] |
Crop offset x |
crop_offset_y |
Optional[int] |
Crop offset y |
crop_width |
Optional[int] |
Crop width |
crop_height |
Optional[int] |
Crop width |
crop_unit |
SizeUnit | Crop size unit |
recording_software |
Optional[Software] | Recording software |
driver |
Optional[DeviceDriver] | Driver |
driver_version |
Optional[str] |
Driver version |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Generic device
| Field | Type | Title (Description) |
|---|---|---|
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Position class for devices
| Field | Type | Title (Description) |
|---|---|---|
relative_position |
List[AnatomicalRelative] | Relative position |
coordinate_system |
Optional[CoordinateSystem] | Device coordinate system |
transform |
Optional[List[Translation or Rotation or Scale or Affine]] | Device to instrument transform (Position and orientation of the device in the instrument coordinate system) |
Description of a Digital Micromirror Device (DMD)
| Field | Type | Title (Description) |
|---|---|---|
max_dmd_patterns |
int |
Max DMD patterns |
invert_pixel_values |
bool |
Invert pixel values |
motion_padding_x |
int |
Motion padding X (pixels) |
motion_padding_y |
int |
Motion padding Y (pixels) |
padding_unit |
SizeUnit | Padding unit |
pixel_size |
float |
DMD Pixel size (fraction of line scan period) |
start_phase |
float |
DMD Start phase (fraction of line scan period) |
dmd_curtain |
List[float] |
DMD Curtain (fraction of DMD scan period) |
line_shear_anchors |
List[float] |
Line shear anchors at top and bottom of field of view (pixels) |
line_shear_anchors_unit |
SizeUnit | Line shear anchors unit |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Description of a running disc (i.e. MindScope Disc)
| Field | Type | Title (Description) |
|---|---|---|
radius |
decimal.Decimal |
Radius (cm) |
radius_unit |
SizeUnit | radius unit |
output |
Optional[DaqChannelType] | (analog or digital electronics) |
encoder |
Optional[str] |
Encoder (Encoder hardware type) |
decoder |
Optional[str] |
Decoder (Decoder chip type) |
encoder_firmware |
Optional[Software] | Encoder firmware (Firmware to read from decoder chip counts) |
surface_material |
Optional[str] |
Surface material |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Description of an enclosure
| Field | Type | Title (Description) |
|---|---|---|
size |
Scale | Size |
size_unit |
SizeUnit | Size unit |
internal_material |
Optional[str] |
Internal material |
external_material |
str |
External material |
grounded |
bool |
Grounded |
laser_interlock |
bool |
Laser interlock |
air_filtration |
bool |
Air filtration |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Named assembly for combining a manipulator and extracellular ephys probes
| Field | Type | Title (Description) |
|---|---|---|
name |
str |
Ephys assembly name |
manipulator |
Manipulator | Manipulator |
probes |
List[EphysProbe] | Probes that are held by this module |
Probe used in an extracellular ephys experiment
| Field | Type | Title (Description) |
|---|---|---|
probe_model |
ProbeModel | Probe model |
headstage |
Optional[Device] | Headstage for this probe |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Module for inserted fiber photometry recording
| Field | Type | Title (Description) |
|---|---|---|
name |
str |
Fiber assembly name |
manipulator |
Manipulator | Manipulator |
fibers |
List[FiberProbe] | Probes that are held by this module |
Description of a patch cord
| Field | Type | Title (Description) |
|---|---|---|
core_diameter |
decimal.Decimal |
Core diameter (um) |
numerical_aperture |
decimal.Decimal |
Numerical aperture |
photobleaching_date |
Optional[datetime.date] |
Photobleaching date |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Description of a fiber optic probe
| Field | Type | Title (Description) |
|---|---|---|
core_diameter |
decimal.Decimal |
Core diameter (um) |
core_diameter_unit |
SizeUnit | Core diameter unit |
numerical_aperture |
decimal.Decimal |
Numerical aperture |
ferrule_material |
Optional[FerruleMaterial] | Ferrule material |
active_length |
Optional[decimal.Decimal] |
Active length (mm) (Length of taper) |
total_length |
decimal.Decimal |
Total length (mm) |
length_unit |
SizeUnit | Length unit |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Filter used in a light path
| Field | Type | Title (Description) |
|---|---|---|
filter_type |
FilterType | Type of filter |
manufacturer |
Organization | |
cut_off_wavelength |
Optional[int] |
Cut-off wavelength (nm) |
cut_on_wavelength |
Optional[int] |
Cut-on wavelength (nm) |
center_wavelength |
int or List[int] or NoneType |
Center wavelength (nm) (Single wavelength or list of wavelengths for MULTIBAND or MULTI_NOTCH filters) |
wavelength_unit |
SizeUnit | Wavelength unit |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
DAQ that uses the Harp protocol for synchronization and data transmission
| Field | Type | Title (Description) |
|---|---|---|
manufacturer |
Organization | |
harp_device_type |
HarpDeviceType | Type of Harp device |
core_version |
Optional[str] |
Core version |
tag_version |
Optional[str] |
Tag version |
data_interface |
DataInterface | Data interface |
is_clock_generator |
bool |
Is Clock Generator |
channels |
List[DAQChannel] | DAQ channels |
firmware_version |
Optional[str] |
Firmware version |
hardware_version |
Optional[str] |
Hardware version |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Description of a Lamp lightsource
| Field | Type | Title (Description) |
|---|---|---|
wavelength_min |
Optional[int] |
Wavelength minimum (nm) |
wavelength_max |
Optional[int] |
Wavelength maximum (nm) |
wavelength_unit |
SizeUnit | Wavelength unit |
temperature |
Optional[int] |
Temperature (K) |
temperature_unit |
Optional[TemperatureUnit] | Temperature unit |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Laser module with a specific wavelength (may be a sub-component of a larger assembly)
| Field | Type | Title (Description) |
|---|---|---|
manufacturer |
Organization | |
wavelength |
int |
Wavelength (nm) |
wavelength_unit |
SizeUnit | Wavelength unit |
coupling |
Optional[Coupling] | Coupling |
coupling_efficiency |
Optional[decimal.Decimal] |
Coupling efficiency (percent) |
coupling_efficiency_unit |
"percent" |
Coupling efficiency unit |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Named assembly combining a manipulator, lasers, collimator, and fibers
| Field | Type | Title (Description) |
|---|---|---|
name |
str |
Laser assembly name |
manipulator |
Manipulator | Manipulator |
lasers |
List[Laser] | Lasers connected to this module |
collimator |
Device | Collimator |
fiber |
FiberPatchCord | Fiber patch |
Lens
| Field | Type | Title (Description) |
|---|---|---|
manufacturer |
Organization | |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Description of a lick spout
| Field | Type | Title (Description) |
|---|---|---|
spout_diameter |
decimal.Decimal |
Spout diameter (mm) |
spout_diameter_unit |
SizeUnit | Spout diameter unit |
solenoid_valve |
Device | Solenoid valve |
lick_sensor |
Device or HarpDevice | Lick sensor |
lick_sensor_type |
Optional[LickSensorType] | Lick sensor type |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Description of multiple lick spouts, possibly mounted on a stage
| Field | Type | Title (Description) |
|---|---|---|
name |
str |
Lick spout assembly name |
lick_spouts |
List[LickSpout] | Water spouts |
motorized_stage |
Optional[MotorizedStage] | Motorized stage |
Named assembly of a light source and lens
| Field | Type | Title (Description) |
|---|---|---|
name |
str |
Light assembly name |
light |
Laser or LightEmittingDiode or Lamp | |
lens |
Lens | Lens |
filter |
Optional[Filter] | Filter |
Description of a Light Emitting Diode (LED) device
| Field | Type | Title (Description) |
|---|---|---|
manufacturer |
Organization | |
wavelength |
int |
Wavelength (nm) |
wavelength_unit |
SizeUnit | Wavelength unit |
bandwidth |
Optional[int] |
Bandwidth (FWHM) |
bandwidth_unit |
Optional[SizeUnit] | Bandwidth unit |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Manipulator used on a dome module
| Field | Type | Title (Description) |
|---|---|---|
manufacturer |
Organization | |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Description of a microscope
| Field | Type | Title (Description) |
|---|---|---|
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Description of visual display for visual stimuli
| Field | Type | Title (Description) |
|---|---|---|
manufacturer |
Organization | |
refresh_rate |
int |
Refresh rate (Hz) |
width |
int |
Width (pixels) |
height |
int |
Height (pixels) |
size_unit |
SizeUnit | Size unit |
viewing_distance |
decimal.Decimal |
Viewing distance (cm) |
viewing_distance_unit |
SizeUnit | Viewing distance unit |
contrast |
Optional[int] |
Contrast (Monitor's contrast setting) |
contrast_unit |
Optional[UnitlessUnit] | Contrast unit |
brightness |
Optional[int] |
Brightness (Monitor's brightness setting) |
brightness_unit |
Optional[UnitlessUnit] | Brightness unit |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
relative_position |
List[AnatomicalRelative] | Relative position |
coordinate_system |
Optional[CoordinateSystem] | Device coordinate system |
transform |
Optional[List[Translation or Rotation or Scale or Affine]] | Device to instrument transform (Position and orientation of the device in the instrument coordinate system) |
Description of motorized stage
| Field | Type | Title (Description) |
|---|---|---|
travel |
decimal.Decimal |
Travel of device (mm) |
travel_unit |
SizeUnit | Travel unit |
firmware |
Optional[Software] | Firmware |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Description of a Myomatrix array
| Field | Type | Title (Description) |
|---|---|---|
array_type |
MyomatrixArrayType | Array type |
threads |
List[MyomatrixThread] | Array threads |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Description of a contact on a myomatrix thread
| Field | Type | Title (Description) |
|---|---|---|
body_part |
MouseAnatomyModel | Body part of contact insertion (Use MouseBodyParts) |
relative_position |
AnatomicalRelative | Relative position (Position relative to procedures coordinate system) |
muscle |
MouseAnatomyModel | Muscle of contact insertion (Use MouseEmgMuscles) |
in_muscle |
bool |
In muscle |
Description of a thread of a myomatrix array
| Field | Type | Title (Description) |
|---|---|---|
ground_electrode_location |
MouseAnatomyModel | Location of ground electrode (Use GroundWireLocations) |
contacts |
List[MyomatrixContact] | Contacts |
PXI-based Neuropixels DAQ
| Field | Type | Title (Description) |
|---|---|---|
basestation_firmware_version |
str |
Basestation firmware version |
bsc_firmware_version |
str |
Basestation connect board firmware |
slot |
int |
Slot number for this basestation |
ports |
List[ProbePort] | Basestation ports |
data_interface |
DataInterface | |
manufacturer |
Organization | |
channels |
List[DAQChannel] | DAQ channels |
firmware_version |
Optional[str] |
Firmware version |
hardware_version |
Optional[str] |
Hardware version |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Description of an objective device
| Field | Type | Title (Description) |
|---|---|---|
numerical_aperture |
decimal.Decimal |
Numerical aperture (in air) |
magnification |
decimal.Decimal |
Magnification |
immersion |
ImmersionMedium | Immersion |
objective_type |
Optional[ObjectiveType] | Objective type |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Description of an olfactometer for odor stimuli
| Field | Type | Title (Description) |
|---|---|---|
manufacturer |
Organization | |
harp_device_type |
HarpDeviceType | Type of Harp device |
channels |
List[OlfactometerChannel] | |
core_version |
Optional[str] |
Core version |
tag_version |
Optional[str] |
Tag version |
data_interface |
DataInterface | Data interface |
is_clock_generator |
bool |
Is Clock Generator |
firmware_version |
Optional[str] |
Firmware version |
hardware_version |
Optional[str] |
Hardware version |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
description of a Olfactometer channel
| Field | Type | Title (Description) |
|---|---|---|
channel_index |
int |
Channel index |
channel_type |
OlfactometerChannelType | Channel type |
flow_capacity |
int |
Flow capacity |
flow_unit |
str |
Flow unit |
Olfactometer channel types
| Name | Value |
|---|---|
ODOR |
Odor |
CARRIER |
Carrier |
Multichannel electrophysiology DAQ
| Field | Type | Title (Description) |
|---|---|---|
ports |
List[ProbePort] | Acquisition board ports |
data_interface |
"USB" |
|
manufacturer |
Organization | |
channels |
List[DAQChannel] | DAQ channels |
firmware_version |
Optional[str] |
Firmware version |
hardware_version |
Optional[str] |
Hardware version |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Assembly combining a manipulator and headstage used for Patch clamp ephys
| Field | Type | Title (Description) |
|---|---|---|
name |
str |
Patch clamp Assembly Name |
manipulator |
Manipulator | Manipulator |
headstage |
Device | Headstage |
Description of a Pockels Cell
| Field | Type | Title (Description) |
|---|---|---|
polygonal_scanner |
Optional[str] |
Polygonal scanner (Must match name of Polygonal scanner) |
on_time |
Optional[decimal.Decimal] |
On time (fraction of cycle) |
off_time |
Optional[decimal.Decimal] |
Off time (fraction of cycle) |
time_setting_unit |
UnitlessUnit | Time setting unit |
beam_modulation |
Optional[decimal.Decimal] |
Beam modulation (V) |
beam_modulation_unit |
Optional[VoltageUnit] | Beam modulation unit |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Description of a Polygonal scanner
| Field | Type | Title (Description) |
|---|---|---|
speed |
int |
Speed (rpm) |
speed_unit |
SpeedUnit | Speed unit |
number_faces |
int |
Number of faces |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Port for a probe connection
| Field | Type | Title (Description) |
|---|---|---|
index |
int |
One-based port index |
probes |
List[str] |
Names of probes connected to this port |
Description of a MRI Scanner
| Field | Type | Title (Description) |
|---|---|---|
magnetic_strength |
float |
Magnetic strength (T) |
magnetic_strength_unit |
MagneticFieldUnit | Magnetic strength unit |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Description of a scanning motorized stages
| Field | Type | Title (Description) |
|---|---|---|
stage_axis_direction |
StageAxisDirection | Direction of stage axis |
stage_axis_name |
AxisName | Name of stage axis |
travel |
decimal.Decimal |
Travel of device (mm) |
travel_unit |
SizeUnit | Travel unit |
firmware |
Optional[Software] | Firmware |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Description of a speaker for auditory stimuli
| Field | Type | Title (Description) |
|---|---|---|
manufacturer |
Organization | |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
relative_position |
List[AnatomicalRelative] | Relative position |
coordinate_system |
Optional[CoordinateSystem] | Device coordinate system |
transform |
Optional[List[Translation or Rotation or Scale or Affine]] | Device to instrument transform (Position and orientation of the device in the instrument coordinate system) |
Description of treadmill platform
| Field | Type | Title (Description) |
|---|---|---|
treadmill_width |
decimal.Decimal |
Width of treadmill (mm) |
width_unit |
SizeUnit | Width unit |
encoder |
Optional[Device] | Encoder |
pulse_per_revolution |
Optional[int] |
Pulse per revolution |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Description of a tube platform
| Field | Type | Title (Description) |
|---|---|---|
diameter |
decimal.Decimal |
Diameter |
diameter_unit |
SizeUnit | Diameter unit |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |
Description of a running wheel
| Field | Type | Title (Description) |
|---|---|---|
radius |
decimal.Decimal |
Radius (mm) |
width |
decimal.Decimal |
Width (mm) |
size_unit |
SizeUnit | Size unit |
encoder |
Device | Encoder |
pulse_per_revolution |
int |
Pulse per revolution |
magnetic_brake |
Device | Magnetic brake |
torque_sensor |
Device | Torque sensor |
name |
str |
Device name |
serial_number |
Optional[str] |
Serial number |
manufacturer |
Optional[Organization] | Manufacturer |
model |
Optional[str] |
Model |
additional_settings |
Optional[dict] |
Additional parameters |
notes |
Optional[str] |
Notes |