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rachelstephleerachelstephlee
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moving data curation here.
1 parent 7b20754 commit 8bc7e33

5 files changed

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‎src/rachel_analysis_utils/data_curation/BA_PVT_datacuration_firstpass.json‎

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{
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"project": "BA/PVT",
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"correct_mapping": {
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"G_0": "BA-nLight",
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"G_1": "BA-5-HT",
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"G_2": "PVT-nLight",
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"R_0": "BA-rDA",
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"R_1": "BA-Ach",
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"R_2": "PVT-rAch"
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},
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"example_session_chosen": "behavior_802291_2025-09-04",
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"802290": {
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"notes": "Drop all",
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"misconnect_fixes": {},
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"drop_all": true,
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"drop_channels": [],
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"drop_sessions": [],
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"borderline_drop": [],
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"drop_sessions_channels": {},
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"borderline_drop_sessions_channels": {}
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},
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"802291": {
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"notes": "G_1: strong, keep. R_1: sometimes poor signals — drop anything with SNR < 20; below 25 is borderline.",
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"misconnect_fixes": {},
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"drop_all": false,
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"drop_channels": [
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"G_0", "R_0", "R_2", "G_2"
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],
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"drop_sessions": [
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"2025-08-29",
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"2025-08-28",
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"2025-08-17",
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"2025-08-22",
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"2025-09-05"
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],
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"borderline_drop": [],
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"drop_sessions_channels": {},
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"borderline_drop_sessions_channels": {
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"R_1": [
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"2025-09-04",
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"2025-09-03",
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"2025-08-20",
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"2025-08-18",
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"2025-08-07",
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"2025-08-14"
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]
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}
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},
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"802292": {
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"notes": "Drop all",
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"drop_all": true,
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"misconnect_fixes": {},
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"drop_channels": [],
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"drop_sessions": [],
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"borderline_drop": [],
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"drop_sessions_channels": {},
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"borderline_drop_sessions_channels": {}
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}
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}

‎src/rachel_analysis_utils/data_curation/CA3_BNST_datacuration_firstpass.json‎

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{
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"project": "CA3/BNST",
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"correct_mapping": {
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"G_0": "BNST-5-HT",
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"G_1": "CA3-5-HT",
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"G_2": "CA3-nLight"
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},
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"example_session_chosen": "behavior_810758_2025--10-28",
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"810756": {
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"notes": "G_0: generally good. G_1: sometimes good, drop SNR < 20. G_2: drop all.",
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"misconnect_fixes": {},
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"drop_channels": [
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"G_2"
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],
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"drop_sessions": [],
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"borderline_drop": [],
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"drop_sessions_channels": {
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"G_1": ["2025-11-10"]
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},
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"borderline_drop_sessions_channels": {
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"G_0": [
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"2025-11-12"
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],
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"G_1": [
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"2025-11-11",
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"2025-11-12"
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]
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}
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},
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"810758": {
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"notes": "Drop 2025-10-14 (no signal). G_0 & G_1: keep generally. G_2: only a few good sessions (see keep list).",
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"misconnect_fixes": {},
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"drop_channels": [],
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"drop_sessions": [
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"2025-10-14"
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],
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"borderline_drop": [],
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"drop_sessions_channels": {
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"G_2": [
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"2025-10-08",
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"2025-10-10",
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"2025-10-13",
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"2025-10-14",
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"2025-10-15",
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"2025-10-21",
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"2025-10-22",
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"2025-10-23",
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"2025-10-24",
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"2025-10-27",
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"2025-10-29",
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"2025-10-30"
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]
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},
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"borderline_drop_sessions_channels": {}
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},
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"810759": {
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"notes": "G_0: borderline/noisy overall. Drop G_1 and G_2.",
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"misconnect_fixes": {},
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"drop_all": true,
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"drop_channels": [
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"G_0",
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"G_1",
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"G_2"
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],
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"drop_sessions": [],
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"borderline_drop": [
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],
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"drop_sessions_channels": {},
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"borderline_drop_sessions_channels": {}
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}
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}

‎src/rachel_analysis_utils/data_curation/CeA_datacuration_firstpass.json‎

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{
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"project": "CeA",
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"correct_mapping": {
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"G_0": "CeA(L)-dLight",
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"G_1": "CeA(R)-5-HT",
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"R_0": "CeA(L)-rAch",
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"R_1": "CeA(R)-rDA"
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},
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"example_session_chosen": "behavior_785193_2026-06-06",
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"785193": {
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"notes": "G_0: all good. G_1: mostly OK — drop anything with SNR < 15 (SNR < 20 is noisy). R_0: all good. R_1: drop across mouse.",
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"misconnect_fixes": {},
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"drop_channels": [
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"R_1"
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],
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"drop_sessions": [],
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"borderline_drop": [],
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"drop_sessions_channels": {
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"G_1": [
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"2025-05-29"
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]
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},
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"borderline_drop_sessions_channels": {
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"G_1": [
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"2025-05-15",
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"2025-05-16",
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"2025-05-28",
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"2025-06-02",
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"2025-06-03",
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"2025-06-10"
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]
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}
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},
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"781900": {
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"notes": "Drop 2025-06-24 (all sessions). R_0 and R_1: drop (poor signals / drop all). G_0 and G_1 available for summary plots where applicable.",
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"misconnect_fixes": {},
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"drop_channels": [
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"R_0",
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"R_1"
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],
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"drop_sessions": [
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"2025-06-24"
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],
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"borderline_drop":[],
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"drop_sessions_channels": {},
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"borderline_drop_sessions_channels": {}
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},
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"781901": {
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"notes": "Drop 2025-06-26 (all sessions). G_1: fairly noisy, would drop. R_0: good. R_1: generally good but some noisy/borderline sessions.",
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"misconnect_fixes": {},
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"drop_channels": [
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"G_1"
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],
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"drop_sessions": [
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"2025-06-26"
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],
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"borderline_drop": [],
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"drop_sessions_channels": {
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"R_1": [
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"2025-05-29",
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"2025-06-12",
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"2025-06-18"
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]
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},
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"borderline_drop_sessions_channels": {
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"R_1": [
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"2025-05-29",
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"2025-06-12",
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"2025-06-18"
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]
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}
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}
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}

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