Removed variants because there are no variants on these positions

Author: PolinaBevad

testdata/integrationtestcases/Somatic;hs38DH.fa;172T_S8.final.chr1_sliced_SOOBE.bam-172N_S7.final.chr1_sliced_SOOBE.bam;chr1;11182141-11182143;;.txt

@@ -1,5 +1 @@
 Somatic,hs38DH.fa,172T_S8.final.chr1_sliced_SOOBE.bam|172N_S7.final.chr1_sliced_SOOBE.bam,chr1,11182141,11182143,
-ArgumentNA_Tumor	testbed	chr7	140453016	140453016	A	T	2092	1	2091	0	1	0	A/T	0.0005	1;0	5.0	0	37.0	0	60.0	2.000	0.0005	0	1.0	1889	0	1835	54	0	0	A/T	0	1;0	0.0	1	0.0	1	0.0	2.000	0	0	0.0	0	1.000	1	CCTTCAATGACTTTCTAGTA	CTCAGCAGCATCTCAGGGCC	chr7:140453011-140453158	Germline	SNV
-ArgumentNA_Tumor	testbed	chr7	140453023	140453023	A	G	6365	3	6311	50	3	0	A/G	0.0005	1;0	7.3	1	24.7	1	60.0	2.000	0.0003	0	1.0	2069	1	2004	63	1	0	A/G	0.0005	1;0	12.0	0	39.0	0	60.0	2.000	0.0005	0	1.0	0	2.000	3	TGACTTTCTAGTAACTCAGC	GCATCTCAGGGCCAAAAATT	chr7:140453011-140453158	LikelyLOH	SNV
-ArgumentNA_Tumor	testbed	chr7	140453025	140453025	C	CA	6440	1	6357	81	1	0	C/+1	0.0002	1;0	15.0	0	41.0	0	60.0	2.000	0.0002	0	0.0	2075	0	2009	65	0	0	C/+1	0	1;0	0.0	1	0.0	1	0.0	2.000	0	0	0.0	1	2.000	1	ACTTTCTAGTAACTCAGCAG	ATCTCAGGGCCAAAAATTTA	chr7:140453011-140453158	Germline	Insertion
-ArgumentNA_Tumor	testbed	chr7	140453026	140453026	A	G	6459	2	6370	83	2	0	A/G	0.0003	1;0	8.0	0	36.0	1	60.0	4.000	0.0003	0	1.0	2075	0	2008	65	0	0	A/G	0	1;0	0.0	1	0.0	1	0.0	4.000	0	0	0.0	1	1.000	1	CTTTCTAGTAACTCAGCAGC	TCTCAGGGCCAAAAATTTAA	chr7:140453011-140453158	Germline	SNV