v1.1.0

AtlasPatch v1.1.0 Release Notes

• Added encode-slide.
• Added encode-patient.
• process remains patch-only.
• Added built-in slide encoders: titan, prism, moozy.
• Added built-in patient encoder: moozy.
• Patch features remain in patches/<stem>.h5 under features/<patch_encoder>.
• Slide embeddings are written to slide_features/<slide_encoder> inside the per-slide H5.
• Patient embeddings are written to patient_features/<encoder>/<case_id>.h5.
• encode-slide reuses existing slide H5 files and computes missing required patch features when needed.
• encode-patient reuses existing slide H5 files and computes missing required patch features when needed.
• Added optional install extras:
  • atlas-patch[patch-encoders]
  • atlas-patch[titan]
  • atlas-patch[prism]
  • atlas-patch[moozy]
  • atlas-patch[slide-encoders]
  • atlas-patch[patient-encoders]