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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -17,16 +17,20 @@ This activity involves developing optimized batch workflows for structure predic
1717
1818### Completed:
1919
20- - [x] Add support for re-using MSAs to Galaxy Australia AlphaFold2 service.
20+ [ x] Add support for re-using MSAs to Galaxy Australia AlphaFold2 service.
2121
2222### In Progress:
2323
24- - [ ] Add local implementation of batch colabfoldsearch to the nfcore [ proteinfold] ( https://nf-co.re/proteinfold/1.1.1 ) pipeline.
25- - [ ] Add mmseqs-GPU support to the nfcore [ proteinfold] ( https://nf-co.re/proteinfold/1.1.1 ) pipeline.
26- - [ ] Add boltz interaction screening workflow to screen multiple potential partners against a protein (re-using MSA for anchor protein).
27- - [ ] Add option for extreme replicate sampling for AlphaFold2.
24+ [ ] Add local implementation of batch colabfoldsearch to the nfcore [ proteinfold] ( https://nf-co.re/proteinfold/1.1.1 ) pipeline.
25+
26+ [ ] Add mmseqs-GPU support to the nfcore [ proteinfold] ( https://nf-co.re/proteinfold/1.1.1 ) pipeline.
27+
28+ [ ] Add boltz interaction screening workflow to screen multiple potential partners against a protein (re-using MSA for anchor protein).
29+
30+ [ ] Add option for extreme replicate sampling for AlphaFold2.
2831
2932### Future:
3033
31- - [ ] Develop Galaxy workflow to take advantage of re-using MSAs.
32- - [ ] Add stoichiometry screening workflow to the nfcore [ proteinfold] ( https://nf-co.re/proteinfold/1.1.1 ) pipeline.
34+ [ ] Develop Galaxy workflow to take advantage of re-using MSAs.
35+
36+ [ ] Add stoichiometry screening workflow to the nfcore [ proteinfold] ( https://nf-co.re/proteinfold/1.1.1 ) pipeline.
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