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update activity tiles
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‎_includes/section-navigation-tiles_mod.html‎

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{% comment %}
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Gemini 2.5 Pro used to assist with the initial creation of this code, based on existing code in events.html (2025-07-07)
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Prompt 1: "Can this jekyll html include be modified to create tiles for individual pages instead of tiles for events?"
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Prompt 2: "Can you also add a small category badge to the tile?"
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{% endcomment %}
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{%- assign pages_to_add_as_tiles = site.pages -%}
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<div class="page-tiles">
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<div class="page-tiles-container">
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<div class="page-tiles-list">
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{%- for page in pages_to_add_as_tiles -%}
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{%- if page.type == include.type %}
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<a href="{{ page.url | relative_url }}" class="page-tile-link">
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<div class="page-tile-item">
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<div class="page-tile-content">
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<h3 class="page-tile-title">{{ page.title }}</h3>
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{% if page.description %}
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<p class="page-tile-description">{{ page.description }}</p>
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{% endif %}
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{% if page.roadmap %}
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<p class="page-tile-roadmap">{{ page.roadmap }}</p>
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{% endif %}
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</div>
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</div>
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</a>
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{%- endif %}
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{%- endfor -%}
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</div>
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</div>
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</div>
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<style>
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.page-tiles-list {
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display: grid;
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grid-template-columns: repeat(auto-fit, minmax(300px, 1fr));
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gap: 20px;
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}
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.page-tile-link {
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text-decoration: none;
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color: inherit;
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display: flex;
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}
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.page-tile-item {
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border: 1px solid #e0e0e0;
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border-radius: 12px;
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padding: 25px;
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transition: all 0.3s ease;
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background: #012152;
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width: 100%;
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display: flex;
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flex-direction: column;
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justify-content: space-between;
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}
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.page-tile-item:hover {
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transform: translateY(-4px);
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box-shadow: 0 8px 25px rgba(0,0,0,0.1);
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border-color: #012152;
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}
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.page-tile-roadmap {
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display: inline-block;
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font-size: 0.7rem;
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font-weight: 700;
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padding: 4px 10px;
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background-color: #eef2f9;
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color: #012152;
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border-radius: 20px;
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margin-bottom: 12px;
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}
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.page-tile-title {
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color: #ffffff;
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font-size: 1.3rem;
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font-weight: 600;
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margin-bottom: 8px;
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}
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.page-tile-description {
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color: #ffffff;
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font-size: 0.9rem;
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line-height: 1.5;
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flex-grow: 1;
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}
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</style>

‎pages/activities.md‎

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## In progress
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{% include section-navigation-tiles-simple.html col = "2" type="activity_in_progress" except="binder_access.md" %}
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{% include section-navigation-tiles_mod.html type ="activity_in_progress" %}
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## Future
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{% include section-navigation-tiles-simple.html col = "2" type="activity_future"%}
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{% include section-navigation-tiles_mod.html type="activity_future"%}
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## Completed
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{% include section-navigation-tiles-simple.html col = "2" type="activity_completed"%}
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{% include section-navigation-tiles_mod.html type ="activity_completed" %}
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‎pages/activities/batch_structure_prediction.md‎

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---
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title: Batch Structure Prediction Workflows
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description: Developing optimized batch workflows for structure prediction.
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type: activity_in_progress
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roadmap: A shared platform, or platforms (Roadmap D3A)
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contributors: [Ziad Al-Bkhetan, Mitchell O'Brien, Joshua Storm Caley, Keiran Rowell, Cameron Hyde, Thomas Litfin]
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toc: false
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---

‎pages/activities/bindcraft_access.md‎

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---
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title: Community Access to BindCraft
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description: Increasing community access to an end-to-end solution for protein binder design.
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type: activity_in_progress
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roadmap: A shared platform, or platforms (Roadmap D3Ac)
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contributors: [Ziad Al-Bkhetan, Thomas Litfin]
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toc: false
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---
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- [BindCraft](https://github.com/martinpacesa/BindCraft) is an end-to-end solution for protein binder design.
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- BindCraft was widely used by participants in a recent blind evaluation (**[Adaptyv Bio](https://www.adaptyvbio.com/blog/po104)**) of protein binder design tools.
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- Several independent groups generated de novo designed binders with competitive affinity to the natural ligand using the BindCraft tool.
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- Several independent groups generated *de novo* designed binders with competitive affinity to the natural ligand using the BindCraft tool.
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- BindCraft tool is available within a NextFlow **[workflow](https://github.com/Australian-Structural-Biology-Computing/bindflow)** to support portable deployment.
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{% include callout.html type="warning" content="Native BindCraft tool requires PyRosetta as a filter with non-commercial license." %}

‎pages/activities/infrastructure_roadmap.md‎

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---
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title: Infrastructure Roadmap
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description: Draft and publish an Australian infrastructure roadmap for addressing computational challenges facing structural biology.
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type: activity_in_progress
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roadmap: Community co-authored document
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toc: false
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---
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‎pages/activities/nci_data_collections.md‎

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---
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title: NCI Data Collection
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description: Create a stable release of up-to-date reference data (with DOI) at the NCI.
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type: activity_in_progress
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roadmap: A shared platform, or platforms (Roadmap D3F)
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contributors: [Matthew Downton, Kisaru Liyanage, Wenjing Xue, Joshua Storm Caley, Thomas Litfin]
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toc: false
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---

‎pages/activities/nci_ood_proteinfold.md‎

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---
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title: OpenOnDemand GUI ProteinFold app
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description: Create and adapt a pilot ProteinFold app for OpenOnDemand.
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type: activity_in_progress
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roadmap: A shared platform, or platforms (Roadmap D3Ac)
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contributors: [Matthew Downton, Kisaru Liyanage, Wenjing Xue, Joshua Storm Caley, Keiran Rowell, Thomas Litfin]
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toc: false
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---

‎pages/activities/nfcore_proteinfold.md‎

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---
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title: nf-core ProteinFold v2.0 Release
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description: Contribute towards, and locally deploy, v2.0 of nf-core ProteinFold workflow.
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type: activity_in_progress
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roadmap: A shared platform, or platforms (Roadmap D3A)
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contributors: [Ziad Al-Bkhetan, Mitchell O'Brien, Joshua Storm Caley, Keiran Rowell, Thomas Litfin]
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toc: false
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---

‎pages/activities/nfcore_proteinfold_pawsey.md‎

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---
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title: nf-core ProteinFold at Pawsey
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description: Deploy nf-core ProteinFold workflow at Pawsey Supercomputing Research Centre.
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type: activity_in_progress
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roadmap: A shared platform, or platforms (Roadmap D3Ab)
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contributors: [Sarah Beecroft, Joshua Storm Caley]
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toc: false
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---

‎pages/activities/protein_design_seminars.md‎

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---
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title: Protein Design Seminar Series (2025)
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description: Community members will host a monthly seminar series to share knowledge on protein design strategies.
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type: activity_in_progress
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roadmap: A computational structural biology training program (Roadmap D2)
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contributors: [Rhys Grinter, Gavin Knott, Cyntia Taveneau, Josh Hardy, Kate Michie, Johan Gustafsson, Melissa Burke]
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toc: false
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---

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