Skip to content

Commit 9a96dff

Browse files
supernordsupernord
authored
Merge pull request #1 from tlitfin-unsw/add-activities
Updated activity details and some cosmetic changes
2 parents 66374c6 + ae1dba3 commit 9a96dff

26 files changed

Lines changed: 685 additions & 26 deletions

‎_data/CONTRIBUTORS.yml‎

Lines changed: 68 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -47,9 +47,71 @@ Michael Healy:
4747
orcid: 0000-0003-2924-9179
4848
affiliation: Postdoctoral Research Fellow, University of Queensland
4949

50-
# Josh was listed as a contributor during testing - checked with him to remove -- KR
51-
#Joshua Storm Caley:
52-
#git: jscgh
53-
#email: j.caley@unsw.edu.au
54-
#orcid: 0000-0002-9374-0969
55-
#affiliation: Computational Systems Officer, Structural Biology Facility UNSW
50+
Joshua Storm Caley:
51+
git: jscgh
52+
email: j.caley@unsw.edu.au
53+
orcid: 0000-0002-9374-0969
54+
affiliation: Computational Systems Officer, Structural Biology Facility UNSW
55+
56+
Thomas Litfin:
57+
git: tlitfin-unsw
58+
email: t.litfin@unsw.edu.au
59+
orcid: 0000-0002-4863-3865
60+
affiliation: Senior Research Associate, Structural Biology Facility UNSW
61+
62+
Ziad Al-Bkhetan:
63+
git: ziadbkh
64+
orcid: 0000-0002-4032-5331
65+
affiliation: Product Manager, Australian BioCommons
66+
67+
Sarah Beecroft:
68+
git: SarahBeecroft
69+
affiliation: Bioinformatics Applications Specialist, Pawsey Supercomputing Research Centre
70+
71+
Cameron Hyde:
72+
git: neoformit
73+
orcid: 0000-0002-5913-9766
74+
affiliation: Bioinformatician, Queensland Cyber Infrastructure Foundation (QCIF)
75+
76+
Mitchell O'Brien:
77+
git: Mitchob
78+
affiliation: Senior Bioinformatics Engineer, Sydney Informatics Hub
79+
80+
Matthew Downton:
81+
git: mattdton
82+
orcid: 0000-0002-4693-1965
83+
affiliation: Associate Director - Performance Optimisation, National Computational Infrastructure (NCI)
84+
85+
Kisaru Liyanage:
86+
git: kisarur
87+
affiliation: HPC specialist (Life and Health Sciences), National Computational Infrastructure (NCI)
88+
89+
Wenjing Xue:
90+
affiliation: HPC Specialist (Life and Health Sciences), National Computational Infrastructure (NCI)
91+
92+
Gavin Knott:
93+
affiliation: Group Leader, Monash Biomedicine Discovery Institute, Monash University
94+
orcid: 0000-0002-9007-6273
95+
96+
Rhys Grinter:
97+
affiliation: Lab head, University of Melbourne
98+
git: RhysWG
99+
orcid: 0000-0002-8195-5348
100+
101+
Josh Hardy:
102+
affiliation: Senior Research Officer, Lucet Lab, WEHI
103+
git: joshhardywehi
104+
email: hardy.j@wehi.edu.au
105+
orcid: 0000-0002-8014-8552
106+
107+
#Richard Birkinshaw:
108+
# affiliation: Senior Research Scientist, Walter and Eliza Hall Institute of Medical Research
109+
# orcid: 0000-0003-1825-0182
110+
111+
Melissa Burke:
112+
affiliation: Training Manager, Australian BioCommons
113+
orcid: 0000-0002-5571-8664
114+
115+
Cyntia Taveneau:
116+
affiliation: Research Fellow, Knott Lab, Monash University
117+
orcid: 0000-0002-3395-4957

‎_data/sidebars/main.yml‎

Lines changed: 13 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -6,7 +6,19 @@ subitems:
66
- title: How-to Guides
77
url: /guides
88
- title: External resources
9-
url: /external_resources
9+
subitems:
10+
- title: Servers
11+
url: external_servers
12+
- title: Databases
13+
url: external_databases
14+
- title: Guides
15+
url: external_guides
16+
- title: Visualization
17+
url: external_viz
18+
- title: Videos
19+
url: external_videos
20+
- title: Communities
21+
url: external_communities
1022
- title: Contributing
1123
url: /contributing
1224
- title: Contributors

‎_includes/resource-table-communities.html‎

Lines changed: 56 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,56 @@
1+
{%- if include.tag %}
2+
{%- assign tools = site.data.tool_and_resource_list | add_related_pages | where:"related_pages", include.tag | sort_natural: "name" %}
3+
{%- else %}
4+
{%- assign tools = site.data.tool_and_resource_list | add_related_pages | sort_natural: "name" %}
5+
{%- endif %}
6+
{%- assign country_pages = site.pages | where_exp: "item", "item.search_exclude != true" | where_exp:"item","item.national_resources != nil" %}
7+
{%- unless tools.size == 0 or tools == nil %}
8+
<a class="visually-hidden-focusable" href='#skip-tool-table'>Skip tool table</a>
9+
<div class="table-responsive mt-4 mb-5">
10+
<table class="tooltable table display">
11+
<thead>
12+
<tr class="text-nowrap">
13+
<th>How-to Guide or resource {%- if include.tag -%}
14+
<a data-bs-toggle="tooltip" data-bs-original-title="This is a curated list which means that not all tools or resources that exist for this topic are listed here. This is mainly because we do not intend to be a registry.">
15+
<i class="fa-solid fa-info-circle"></i>
16+
</a>{%- endif %}
17+
</th>
18+
<th>Description</th>
19+
</tr>
20+
</thead>
21+
<tbody>
22+
{%- for tool in tools %}
23+
{% assign found = false %}
24+
{% for desc in tool.Type %}
25+
{% if desc == "Online communities" %}
26+
{% assign found = true %}
27+
{% endif %}
28+
{% endfor %}
29+
{% if found %}
30+
<tr>
31+
{% if tool.URL %}
32+
<td><a href="{{tool.URL}}">{{tool.Title}}</a></td>
33+
{%- else %}
34+
<td>{{tool.Title}}</td>
35+
{%- endif %}
36+
<td>{{tool.Description}}
37+
{%- if tool.instance_of or tool.how_to_access or instances_tool != 0 and total_county_tools != 0 and include.tag != nil %}
38+
{%- assign linked_tool = site.data.tool_and_resource_list | where:"id", tool.instance_of | first %}
39+
<div class="d-block mt-1">
40+
{%- if linked_tool %}
41+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{linked_tool.name}}"><span class="badge text-primary border border-primary">{{linked_tool.name}}</span></span>
42+
{%- endif %}
43+
{%- if tool.how_to_access %}
44+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span>
45+
{%- endif %}
46+
</div>
47+
{%- endif %}
48+
</td>
49+
</tr>
50+
{%- endif %}
51+
{%- endfor %}
52+
</tbody>
53+
</table>
54+
</div>
55+
{%- endunless %}
56+
<div id="skip-tool-table"></div>

‎_includes/resource-table-dbs.html‎

Lines changed: 56 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,56 @@
1+
{%- if include.tag %}
2+
{%- assign tools = site.data.tool_and_resource_list | add_related_pages | where:"related_pages", include.tag | sort_natural: "name" %}
3+
{%- else %}
4+
{%- assign tools = site.data.tool_and_resource_list | add_related_pages | sort_natural: "name" %}
5+
{%- endif %}
6+
{%- assign country_pages = site.pages | where_exp: "item", "item.search_exclude != true" | where_exp:"item","item.national_resources != nil" %}
7+
{%- unless tools.size == 0 or tools == nil %}
8+
<a class="visually-hidden-focusable" href='#skip-tool-table'>Skip tool table</a>
9+
<div class="table-responsive mt-4 mb-5">
10+
<table class="tooltable table display">
11+
<thead>
12+
<tr class="text-nowrap">
13+
<th>How-to Guide or resource {%- if include.tag -%}
14+
<a data-bs-toggle="tooltip" data-bs-original-title="This is a curated list which means that not all tools or resources that exist for this topic are listed here. This is mainly because we do not intend to be a registry.">
15+
<i class="fa-solid fa-info-circle"></i>
16+
</a>{%- endif %}
17+
</th>
18+
<th>Description</th>
19+
</tr>
20+
</thead>
21+
<tbody>
22+
{%- for tool in tools %}
23+
{% assign found = false %}
24+
{% for desc in tool.Type %}
25+
{% if desc == "Reference databases" %}
26+
{% assign found = true %}
27+
{% endif %}
28+
{% endfor %}
29+
{% if found %}
30+
<tr>
31+
{% if tool.URL %}
32+
<td><a href="{{tool.URL}}">{{tool.Title}}</a></td>
33+
{%- else %}
34+
<td>{{tool.Title}}</td>
35+
{%- endif %}
36+
<td>{{tool.Description}}
37+
{%- if tool.instance_of or tool.how_to_access or instances_tool != 0 and total_county_tools != 0 and include.tag != nil %}
38+
{%- assign linked_tool = site.data.tool_and_resource_list | where:"id", tool.instance_of | first %}
39+
<div class="d-block mt-1">
40+
{%- if linked_tool %}
41+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{linked_tool.name}}"><span class="badge text-primary border border-primary">{{linked_tool.name}}</span></span>
42+
{%- endif %}
43+
{%- if tool.how_to_access %}
44+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span>
45+
{%- endif %}
46+
</div>
47+
{%- endif %}
48+
</td>
49+
</tr>
50+
{%- endif %}
51+
{%- endfor %}
52+
</tbody>
53+
</table>
54+
</div>
55+
{%- endunless %}
56+
<div id="skip-tool-table"></div>

‎_includes/resource-table-guides.html‎

Lines changed: 56 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,56 @@
1+
{%- if include.tag %}
2+
{%- assign tools = site.data.tool_and_resource_list | add_related_pages | where:"related_pages", include.tag | sort_natural: "name" %}
3+
{%- else %}
4+
{%- assign tools = site.data.tool_and_resource_list | add_related_pages | sort_natural: "name" %}
5+
{%- endif %}
6+
{%- assign country_pages = site.pages | where_exp: "item", "item.search_exclude != true" | where_exp:"item","item.national_resources != nil" %}
7+
{%- unless tools.size == 0 or tools == nil %}
8+
<a class="visually-hidden-focusable" href='#skip-tool-table'>Skip tool table</a>
9+
<div class="table-responsive mt-4 mb-5">
10+
<table class="tooltable table display">
11+
<thead>
12+
<tr class="text-nowrap">
13+
<th>How-to Guide or resource {%- if include.tag -%}
14+
<a data-bs-toggle="tooltip" data-bs-original-title="This is a curated list which means that not all tools or resources that exist for this topic are listed here. This is mainly because we do not intend to be a registry.">
15+
<i class="fa-solid fa-info-circle"></i>
16+
</a>{%- endif %}
17+
</th>
18+
<th>Description</th>
19+
</tr>
20+
</thead>
21+
<tbody>
22+
{%- for tool in tools %}
23+
{% assign found = false %}
24+
{% for desc in tool.Type %}
25+
{% if desc == "Computational structural bio guides and tutorials" %}
26+
{% assign found = true %}
27+
{% endif %}
28+
{% endfor %}
29+
{% if found %}
30+
<tr>
31+
{% if tool.URL %}
32+
<td><a href="{{tool.URL}}">{{tool.Title}}</a></td>
33+
{%- else %}
34+
<td>{{tool.Title}}</td>
35+
{%- endif %}
36+
<td>{{tool.Description}}
37+
{%- if tool.instance_of or tool.how_to_access or instances_tool != 0 and total_county_tools != 0 and include.tag != nil %}
38+
{%- assign linked_tool = site.data.tool_and_resource_list | where:"id", tool.instance_of | first %}
39+
<div class="d-block mt-1">
40+
{%- if linked_tool %}
41+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{linked_tool.name}}"><span class="badge text-primary border border-primary">{{linked_tool.name}}</span></span>
42+
{%- endif %}
43+
{%- if tool.how_to_access %}
44+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span>
45+
{%- endif %}
46+
</div>
47+
{%- endif %}
48+
</td>
49+
</tr>
50+
{%- endif %}
51+
{%- endfor %}
52+
</tbody>
53+
</table>
54+
</div>
55+
{%- endunless %}
56+
<div id="skip-tool-table"></div>

‎_includes/resource-table-servers.html‎

Lines changed: 56 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,56 @@
1+
{%- if include.tag %}
2+
{%- assign tools = site.data.tool_and_resource_list | add_related_pages | where:"related_pages", include.tag | sort_natural: "name" %}
3+
{%- else %}
4+
{%- assign tools = site.data.tool_and_resource_list | add_related_pages | sort_natural: "name" %}
5+
{%- endif %}
6+
{%- assign country_pages = site.pages | where_exp: "item", "item.search_exclude != true" | where_exp:"item","item.national_resources != nil" %}
7+
{%- unless tools.size == 0 or tools == nil %}
8+
<a class="visually-hidden-focusable" href='#skip-tool-table'>Skip tool table</a>
9+
<div class="table-responsive mt-4 mb-5">
10+
<table class="tooltable table display">
11+
<thead>
12+
<tr class="text-nowrap">
13+
<th>How-to Guide or resource {%- if include.tag -%}
14+
<a data-bs-toggle="tooltip" data-bs-original-title="This is a curated list which means that not all tools or resources that exist for this topic are listed here. This is mainly because we do not intend to be a registry.">
15+
<i class="fa-solid fa-info-circle"></i>
16+
</a>{%- endif %}
17+
</th>
18+
<th>Description</th>
19+
</tr>
20+
</thead>
21+
<tbody>
22+
{%- for tool in tools %}
23+
{% assign found = false %}
24+
{% for desc in tool.Type %}
25+
{% if desc == "Webservers and computing resources" %}
26+
{% assign found = true %}
27+
{% endif %}
28+
{% endfor %}
29+
{% if found %}
30+
<tr>
31+
{% if tool.URL %}
32+
<td><a href="{{tool.URL}}">{{tool.Title}}</a></td>
33+
{%- else %}
34+
<td>{{tool.Title}}</td>
35+
{%- endif %}
36+
<td>{{tool.Description}}
37+
{%- if tool.instance_of or tool.how_to_access or instances_tool != 0 and total_county_tools != 0 and include.tag != nil %}
38+
{%- assign linked_tool = site.data.tool_and_resource_list | where:"id", tool.instance_of | first %}
39+
<div class="d-block mt-1">
40+
{%- if linked_tool %}
41+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{linked_tool.name}}"><span class="badge text-primary border border-primary">{{linked_tool.name}}</span></span>
42+
{%- endif %}
43+
{%- if tool.how_to_access %}
44+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span>
45+
{%- endif %}
46+
</div>
47+
{%- endif %}
48+
</td>
49+
</tr>
50+
{%- endif %}
51+
{%- endfor %}
52+
</tbody>
53+
</table>
54+
</div>
55+
{%- endunless %}
56+
<div id="skip-tool-table"></div>

‎_includes/resource-table-videos.html‎

Lines changed: 56 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,56 @@
1+
{%- if include.tag %}
2+
{%- assign tools = site.data.tool_and_resource_list | add_related_pages | where:"related_pages", include.tag | sort_natural: "name" %}
3+
{%- else %}
4+
{%- assign tools = site.data.tool_and_resource_list | add_related_pages | sort_natural: "name" %}
5+
{%- endif %}
6+
{%- assign country_pages = site.pages | where_exp: "item", "item.search_exclude != true" | where_exp:"item","item.national_resources != nil" %}
7+
{%- unless tools.size == 0 or tools == nil %}
8+
<a class="visually-hidden-focusable" href='#skip-tool-table'>Skip tool table</a>
9+
<div class="table-responsive mt-4 mb-5">
10+
<table class="tooltable table display">
11+
<thead>
12+
<tr class="text-nowrap">
13+
<th>How-to Guide or resource {%- if include.tag -%}
14+
<a data-bs-toggle="tooltip" data-bs-original-title="This is a curated list which means that not all tools or resources that exist for this topic are listed here. This is mainly because we do not intend to be a registry.">
15+
<i class="fa-solid fa-info-circle"></i>
16+
</a>{%- endif %}
17+
</th>
18+
<th>Description</th>
19+
</tr>
20+
</thead>
21+
<tbody>
22+
{%- for tool in tools %}
23+
{% assign found = false %}
24+
{% for desc in tool.Type %}
25+
{% if desc == "YouTube talks and tutorials" %}
26+
{% assign found = true %}
27+
{% endif %}
28+
{% endfor %}
29+
{% if found %}
30+
<tr>
31+
{% if tool.URL %}
32+
<td><a href="{{tool.URL}}">{{tool.Title}}</a></td>
33+
{%- else %}
34+
<td>{{tool.Title}}</td>
35+
{%- endif %}
36+
<td>{{tool.Description}}
37+
{%- if tool.instance_of or tool.how_to_access or instances_tool != 0 and total_county_tools != 0 and include.tag != nil %}
38+
{%- assign linked_tool = site.data.tool_and_resource_list | where:"id", tool.instance_of | first %}
39+
<div class="d-block mt-1">
40+
{%- if linked_tool %}
41+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{linked_tool.name}}"><span class="badge text-primary border border-primary">{{linked_tool.name}}</span></span>
42+
{%- endif %}
43+
{%- if tool.how_to_access %}
44+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span>
45+
{%- endif %}
46+
</div>
47+
{%- endif %}
48+
</td>
49+
</tr>
50+
{%- endif %}
51+
{%- endfor %}
52+
</tbody>
53+
</table>
54+
</div>
55+
{%- endunless %}
56+
<div id="skip-tool-table"></div>

0 commit comments

Comments
 (0)