Merge pull request #65 from tlitfin/oct-updates2

Activity updates

Author: supernord

_data/CONTRIBUTORS.yml

@@ -154,4 +154,9 @@ Georgie Samaha:
 Farah Zaib Khan:
     affiliation: Scientific Business Analyst, The University of Melbourne, Australian BioCommons
     orcid: 0000-0002-6337-3037
-    image_url: /images/contributors/Khan_F.jpeg
+    image_url: /images/contributors/Khan_F.jpeg
+
+Sehrish Kanwal:
+    affiliation: Senior Research Fellow (Bioinformatics), The University of Melbourne
+    git: skanwal
+    orcid: https://orcid.org/0000-0002-5044-4692

pages/activities/abacbs_workshop.md

@@ -4,7 +4,7 @@ description: Leveraging peak Australian compute to enable workflows for predicti
 type: activity_in_progress
 roadmap: A computational structural biology training program (Roadmap D2)
 roadmap_category: D2
-contributors: [Johan Gustafsson, Ziad Al-Bkhetan, Thomas Litfin, Sarah Beecroft, Georgie Samaha, Mitchell O'Brien, Farah Zaib Khan]
+contributors: [Johan Gustafsson, Ziad Al-Bkhetan, Thomas Litfin, Sarah Beecroft, Georgie Samaha, Mitchell O'Brien, Farah Zaib Khan, Sehrish Kanwal]
 toc: false
 redirect_from: /website/abacbs25_workshop
 ---

pages/activities/nci_data_collections.md

@@ -24,10 +24,11 @@ This activity aims to create a stable release of up-to-date reference data (with
 - Harmonize data across different structure prediction models (AlphaFold2, AlphaFold3, Boltz, ColabFold, HelixFold3, RosettaFold-AA).
 - NCI Data Collection expression of interest (Accepted).
 - Provision new NCI project for storage and data management.
+- Populate structure prediction reference data in data collection project.
+- Validate reference data collection.
 
 ### In Progress
-- Populate structure prediction reference data in data collection project.
+- Prepare metadata for data catalog
 
 ### Future
-- Validate reference data collection
 - Mint DOI.

pages/activities/nfcore_proteinfold.md

@@ -28,12 +28,13 @@ redirect_from: /website/nfcore_proteinfold
     - AlphaFold3 (BYO weights).
 - Add support for local MSA search for Boltz.
 - Add standardized reporting with visualisation.
-- Add standard QC metrics to HTML report.
+- Add standard QC metrics to HTML report (PAE, MSA coverage).
 - Add process labels to improve efficient use of infrastructure.
 - De-duplicate reference datasets across different methods.
+- Add miniature reference databases for fast troubleshooting.
+- Update documentation and metro-map.
+- Test for release.
 
 ### In Progress
 
-- Add minituare reference databases for fast troubleshooting.
-- Update documentation and metro-map.
-- Test for release.
+- Review workflow outputs for all modes.

pages/activities/nfcore_proteinfold_pawsey.md

@@ -18,15 +18,15 @@ redirect_from: /website/nfcore_proteinfold_pawsey
 ### Completed
 
 - Build AMD compatible container for AlphaFold2.
+- Build AMD compatible container for ColabFold.
 - Build AMD compatible container for Boltz-1.
 - Build AMD compatible container for ESMFold.
+- Build AMD compatible container for Boltz-2.
+- Adapt containers for compatibility with nf-core proteinfold.
+- Test nfcore proteinfold workflow at Pawsey.
 
 ### In Progress
 
-- Adapt containers for compatibility with nf-core proteinfold.
-- Test nfcore proteinfold workflow at Pawsey.
+- ProteinFold config optimized for Pawsey.
 
 ### Future
-
-- Build AMD compatible container for Boltz-2.
-- ProteinFold config optimized for Pawsey.