Update software table

Author: tlitfin

_data/tool_and_resource_list.yml

@@ -342,8 +342,6 @@
   Title: nf-core ProteinFold v2.0.0
   Type:
   - Workflow
-  Roadmap:
-  - Roadmap deliverable 3
   URL: nfcore_proteinfold
   DOI: https://doi.org/10.5281/zenodo.7437037
 - Description: Predicts the structure of target proteins using MSAs generated by hhblits/jackhmmer.
@@ -352,57 +350,45 @@
   Type:
   - Software
   - For AMD GPUs
-  Roadmap:
-  - Roadmap deliverable 3
   URL: https://pawsey.atlassian.net/wiki/spaces/US/pages/611418237/Using+AlphaFold2+on+AMD+GPUs
-  DOI:
+  DOI: https://doi.org/10.1038/s41586-021-03819-2
 - Description: Predicts the structure of target molecules (proteins, nucleic acids, small molecules) using MSAs generated by MMSeqs2.
   Tag: Software
-  Title: Boltz
+  Title: Boltz-2
   Type:
   - Software
   - For AMD GPUs
-  Roadmap:
-  - Roadmap deliverable 3
   URL: https://pawsey.atlassian.net/wiki/spaces/US/pages/1767571575/Using+Boltz+v.2.2.1+on+AMD+GPUs
-  DOI:
+  DOI: https://doi.org/10.1101/2025.06.14.659707
 - Description: Predicts the structure of target proteins using MSAs generated by MMSeqs2.
   Tag: Software
   Title: ColabFold
   Type:
   - Software
   - For AMD GPUs
-  Roadmap:
-  - Roadmap deliverable 3
   URL: https://pawsey.atlassian.net/wiki/spaces/US/pages/611123341/Using+ColabFold+on+AMD+GPUs
-  DOI:
+  DOI: https://doi.org/10.1038/s41592-022-01488-1
 - Description: Predicts the structure of a target sequence using the ESM pre-trained language model.
   Tag: Software
   Title: ESMFold
   Type:
   - Software
   - For AMD GPUs
-  Roadmap:
-  - Roadmap deliverable 3
   URL: https://pawsey.atlassian.net/wiki/spaces/US/pages/1028816938/Using+ESMFold+on+AMD+GPUs
-  DOI:
+  DOI: https://doi.org/10.1126/science.ade2574
 - Description: Predicts a sequence composition compatible with an input target structure.
   Tag: Software
   Title: ProteinMPNN
   Type:
   - Software
   - For AMD GPUs
-  Roadmap:
-  - Roadmap deliverable 3
   URL: https://pawsey.atlassian.net/wiki/spaces/US/pages/613089393/Using+ProteinMPNN+on+AMD+GPUs
-  DOI:
+  DOI: https://doi.org/10.1126/science.add2187
 - Description: Diffusion-based model to generate new protein structures.
   Tag: Software
   Title: RFdiffusion
   Type:
   - Software
   - For AMD GPUs
-  Roadmap:
-  - Roadmap deliverable 3
   URL: https://pawsey.atlassian.net/wiki/spaces/US/pages/808091691/Using+RFDiffusion+on+AMD+GPUs
-  DOI:
+  DOI: https://doi.org/10.1038/s41586-023-06415-8

pages/resources/software.md

@@ -4,7 +4,7 @@ page_id: software
 toc: false
 ---
 
-The software listed here is the result of activities across the ASBC community. An additional label has been added to those activities that address a deliverable from the [infrastructure roadmap](https://doi.org/10.5281/zenodo.15786982).
+The software listed here is made available on Australian national infrastructure in support of activities across the ASBC community.
 
 {% include resource-table-category.html category="Software" %}