From eed28e38c5f130510d051e947e97114ceae4049d Mon Sep 17 00:00:00 2001 From: Johan Gustafsson Date: Mon, 7 Jul 2025 14:46:40 +0930 Subject: [PATCH 1/2] organise directories for pages --- {cli_instruct => pages/cli_instruct}/basics.md | 0 {contributing => pages/contributing}/contributing.md | 0 {contributing => pages/contributing}/guide_template.md | 0 {contributing => pages/contributing}/provide_documentation.md | 0 .../protein_struct_pred}/AlphaFold2_how_to_guide.md | 0 .../protein_struct_pred}/EBI-alphafold-guide.md | 0 .../protein_struct_pred}/best-practices-alphafold.md | 0 .../protein_struct_pred}/protein_struct_inference.md | 0 {visualisation => pages/visualisation}/pymol.md | 0 9 files changed, 0 insertions(+), 0 deletions(-) rename {cli_instruct => pages/cli_instruct}/basics.md (100%) rename {contributing => pages/contributing}/contributing.md (100%) rename {contributing => pages/contributing}/guide_template.md (100%) rename {contributing => pages/contributing}/provide_documentation.md (100%) rename {protein_struct_pred => pages/protein_struct_pred}/AlphaFold2_how_to_guide.md (100%) rename {protein_struct_pred => pages/protein_struct_pred}/EBI-alphafold-guide.md (100%) rename {protein_struct_pred => pages/protein_struct_pred}/best-practices-alphafold.md (100%) rename {protein_struct_pred => pages/protein_struct_pred}/protein_struct_inference.md (100%) rename {visualisation => pages/visualisation}/pymol.md (100%) diff --git a/cli_instruct/basics.md b/pages/cli_instruct/basics.md similarity index 100% rename from cli_instruct/basics.md rename to pages/cli_instruct/basics.md diff --git a/contributing/contributing.md b/pages/contributing/contributing.md similarity index 100% rename from contributing/contributing.md rename to pages/contributing/contributing.md diff --git a/contributing/guide_template.md b/pages/contributing/guide_template.md similarity index 100% rename from contributing/guide_template.md rename to pages/contributing/guide_template.md diff --git a/contributing/provide_documentation.md b/pages/contributing/provide_documentation.md similarity index 100% rename from contributing/provide_documentation.md rename to pages/contributing/provide_documentation.md diff --git a/protein_struct_pred/AlphaFold2_how_to_guide.md b/pages/protein_struct_pred/AlphaFold2_how_to_guide.md similarity index 100% rename from protein_struct_pred/AlphaFold2_how_to_guide.md rename to pages/protein_struct_pred/AlphaFold2_how_to_guide.md diff --git a/protein_struct_pred/EBI-alphafold-guide.md b/pages/protein_struct_pred/EBI-alphafold-guide.md similarity index 100% rename from protein_struct_pred/EBI-alphafold-guide.md rename to pages/protein_struct_pred/EBI-alphafold-guide.md diff --git a/protein_struct_pred/best-practices-alphafold.md b/pages/protein_struct_pred/best-practices-alphafold.md similarity index 100% rename from protein_struct_pred/best-practices-alphafold.md rename to pages/protein_struct_pred/best-practices-alphafold.md diff --git a/protein_struct_pred/protein_struct_inference.md b/pages/protein_struct_pred/protein_struct_inference.md similarity index 100% rename from protein_struct_pred/protein_struct_inference.md rename to pages/protein_struct_pred/protein_struct_inference.md diff --git a/visualisation/pymol.md b/pages/visualisation/pymol.md similarity index 100% rename from visualisation/pymol.md rename to pages/visualisation/pymol.md From 54f77a703829ab38561c3d4eb50f5b40e8748612 Mon Sep 17 00:00:00 2001 From: Johan Gustafsson Date: Tue, 8 Jul 2025 09:00:57 +0930 Subject: [PATCH 2/2] organise directories --- pages/activities/binder_access.md | 7 ------- pages/{ => guides}/cli_instruct/basics.md | 0 .../protein_struct_pred/AlphaFold2_how_to_guide.md | 0 .../protein_struct_pred/best-practices-alphafold.md | 0 .../protein_struct_pred/protein_struct_inference.md | 0 pages/{ => guides}/visualisation/pymol.md | 0 pages/protein_struct_pred/EBI-alphafold-guide.md | 13 ------------- .../workgroup_index.md | 0 8 files changed, 20 deletions(-) delete mode 100644 pages/activities/binder_access.md rename pages/{ => guides}/cli_instruct/basics.md (100%) rename pages/{ => guides}/protein_struct_pred/AlphaFold2_how_to_guide.md (100%) rename pages/{ => guides}/protein_struct_pred/best-practices-alphafold.md (100%) rename pages/{ => guides}/protein_struct_pred/protein_struct_inference.md (100%) rename pages/{ => guides}/visualisation/pymol.md (100%) delete mode 100644 pages/protein_struct_pred/EBI-alphafold-guide.md rename {workgroup_template_directory => pages/workgroup_template_directory}/workgroup_index.md (100%) diff --git a/pages/activities/binder_access.md b/pages/activities/binder_access.md deleted file mode 100644 index 624242b..0000000 --- a/pages/activities/binder_access.md +++ /dev/null @@ -1,7 +0,0 @@ ---- -title: Exploring how to increase access to RFdiffusion -type: activity_in_progress -toc: false ---- - -A collaborative activity bringing together members of the computational structural biology community, infrastructure providers, and the Australian BioCommons, in order to determine how to increase access to binder code (e.g. RFdiffusion) for life science researchers. diff --git a/pages/cli_instruct/basics.md b/pages/guides/cli_instruct/basics.md similarity index 100% rename from pages/cli_instruct/basics.md rename to pages/guides/cli_instruct/basics.md diff --git a/pages/protein_struct_pred/AlphaFold2_how_to_guide.md b/pages/guides/protein_struct_pred/AlphaFold2_how_to_guide.md similarity index 100% rename from pages/protein_struct_pred/AlphaFold2_how_to_guide.md rename to pages/guides/protein_struct_pred/AlphaFold2_how_to_guide.md diff --git a/pages/protein_struct_pred/best-practices-alphafold.md b/pages/guides/protein_struct_pred/best-practices-alphafold.md similarity index 100% rename from pages/protein_struct_pred/best-practices-alphafold.md rename to pages/guides/protein_struct_pred/best-practices-alphafold.md diff --git a/pages/protein_struct_pred/protein_struct_inference.md b/pages/guides/protein_struct_pred/protein_struct_inference.md similarity index 100% rename from pages/protein_struct_pred/protein_struct_inference.md rename to pages/guides/protein_struct_pred/protein_struct_inference.md diff --git a/pages/visualisation/pymol.md b/pages/guides/visualisation/pymol.md similarity index 100% rename from pages/visualisation/pymol.md rename to pages/guides/visualisation/pymol.md diff --git a/pages/protein_struct_pred/EBI-alphafold-guide.md b/pages/protein_struct_pred/EBI-alphafold-guide.md deleted file mode 100644 index 8b8224a..0000000 --- a/pages/protein_struct_pred/EBI-alphafold-guide.md +++ /dev/null @@ -1,13 +0,0 @@ ---- -title: EBI-guide -type: prot-guide -contributors: [Keiran Rowell] -description: Linking straight out to EBI guide -affiliations: [Structural Biology Facility UNSW] ---- - -training: - - name: EBI alphafold guide - registry: EBI - url: https://www.ebi.ac.uk/training/online/courses/alphafold/ - diff --git a/workgroup_template_directory/workgroup_index.md b/pages/workgroup_template_directory/workgroup_index.md similarity index 100% rename from workgroup_template_directory/workgroup_index.md rename to pages/workgroup_template_directory/workgroup_index.md