From 8f5aead18e443c71eca7a0708e7bab4983a2b7c6 Mon Sep 17 00:00:00 2001 From: Johan Gustafsson Date: Thu, 10 Jul 2025 08:47:37 +0930 Subject: [PATCH 1/6] add roadmap category to activity pages --- _config.yml | 2 +- pages/activities/batch_structure_prediction.md | 1 + pages/activities/bindcraft_access.md | 1 + pages/activities/infrastructure_roadmap.md | 1 + pages/activities/nci_data_collections.md | 1 + pages/activities/nci_ood_proteinfold.md | 1 + pages/activities/nfcore_proteinfold.md | 1 + pages/activities/nfcore_proteinfold_pawsey.md | 1 + pages/activities/protein_design_seminars.md | 1 + 9 files changed, 9 insertions(+), 1 deletion(-) diff --git a/_config.yml b/_config.yml index ed250bc..2dfa4b8 100644 --- a/_config.yml +++ b/_config.yml @@ -38,7 +38,7 @@ defaults: theme_variables: # git_host: GitHub - # back_to_top: true + back_to_top: true # privacy_statement_url: /privacy # github_buttons: # position: top diff --git a/pages/activities/batch_structure_prediction.md b/pages/activities/batch_structure_prediction.md index 0a6a6cb..bd6ad69 100644 --- a/pages/activities/batch_structure_prediction.md +++ b/pages/activities/batch_structure_prediction.md @@ -3,6 +3,7 @@ title: Batch Structure Prediction Workflows description: Developing optimized batch workflows for structure prediction. type: activity_in_progress roadmap: A shared platform, or platforms (Roadmap D3A) +roadmap_category: D3 contributors: [Ziad Al-Bkhetan, Mitchell O'Brien, Joshua Storm Caley, Keiran Rowell, Cameron Hyde, Thomas Litfin] toc: false --- diff --git a/pages/activities/bindcraft_access.md b/pages/activities/bindcraft_access.md index fab8156..487654a 100644 --- a/pages/activities/bindcraft_access.md +++ b/pages/activities/bindcraft_access.md @@ -3,6 +3,7 @@ title: Community Access to BindCraft description: Increasing community access to an end-to-end solution for protein binder design. type: activity_in_progress roadmap: A shared platform, or platforms (Roadmap D3Ac) +roadmap_category: D3 contributors: [Ziad Al-Bkhetan, Thomas Litfin] toc: false --- diff --git a/pages/activities/infrastructure_roadmap.md b/pages/activities/infrastructure_roadmap.md index df11872..1ad3c78 100644 --- a/pages/activities/infrastructure_roadmap.md +++ b/pages/activities/infrastructure_roadmap.md @@ -3,6 +3,7 @@ title: Infrastructure Roadmap description: Draft and publish an Australian infrastructure roadmap for addressing computational challenges facing structural biology. type: activity_in_progress roadmap: Community co-authored document +roadmap_category: none toc: false --- diff --git a/pages/activities/nci_data_collections.md b/pages/activities/nci_data_collections.md index 145c9b3..7a15dd9 100644 --- a/pages/activities/nci_data_collections.md +++ b/pages/activities/nci_data_collections.md @@ -3,6 +3,7 @@ title: NCI Data Collection description: Create a stable release of up-to-date reference data (with DOI) at the NCI. type: activity_in_progress roadmap: A shared platform, or platforms (Roadmap D3F) +roadmap_category: D3 contributors: [Matthew Downton, Kisaru Liyanage, Wenjing Xue, Joshua Storm Caley, Thomas Litfin] toc: false --- diff --git a/pages/activities/nci_ood_proteinfold.md b/pages/activities/nci_ood_proteinfold.md index f3ac914..2d40c3d 100644 --- a/pages/activities/nci_ood_proteinfold.md +++ b/pages/activities/nci_ood_proteinfold.md @@ -3,6 +3,7 @@ title: OpenOnDemand GUI ProteinFold app description: Create and adapt a pilot ProteinFold app for OpenOnDemand. type: activity_in_progress roadmap: A shared platform, or platforms (Roadmap D3Ac) +roadmap_category: D3 contributors: [Matthew Downton, Kisaru Liyanage, Wenjing Xue, Joshua Storm Caley, Keiran Rowell, Thomas Litfin] toc: false --- diff --git a/pages/activities/nfcore_proteinfold.md b/pages/activities/nfcore_proteinfold.md index bbb80a4..8baca22 100644 --- a/pages/activities/nfcore_proteinfold.md +++ b/pages/activities/nfcore_proteinfold.md @@ -3,6 +3,7 @@ title: nf-core ProteinFold v2.0 Release description: Contribute towards, and locally deploy, v2.0 of nf-core ProteinFold workflow. type: activity_in_progress roadmap: A shared platform, or platforms (Roadmap D3A) +roadmap_category: D3 contributors: [Ziad Al-Bkhetan, Mitchell O'Brien, Joshua Storm Caley, Keiran Rowell, Thomas Litfin] toc: false --- diff --git a/pages/activities/nfcore_proteinfold_pawsey.md b/pages/activities/nfcore_proteinfold_pawsey.md index 0c2bd5a..da937ea 100644 --- a/pages/activities/nfcore_proteinfold_pawsey.md +++ b/pages/activities/nfcore_proteinfold_pawsey.md @@ -3,6 +3,7 @@ title: nf-core ProteinFold at Pawsey description: Deploy nf-core ProteinFold workflow at Pawsey Supercomputing Research Centre. type: activity_in_progress roadmap: A shared platform, or platforms (Roadmap D3Ab) +roadmap_category: D3 contributors: [Sarah Beecroft, Joshua Storm Caley] toc: false --- diff --git a/pages/activities/protein_design_seminars.md b/pages/activities/protein_design_seminars.md index 0516341..6a8709f 100644 --- a/pages/activities/protein_design_seminars.md +++ b/pages/activities/protein_design_seminars.md @@ -3,6 +3,7 @@ title: Protein Design Seminar Series (2025) description: Community members will host a monthly seminar series to share knowledge on protein design strategies. type: activity_in_progress roadmap: A computational structural biology training program (Roadmap D2) +roadmap_category: D2 contributors: [Rhys Grinter, Gavin Knott, Cyntia Taveneau, Josh Hardy, Kate Michie, Johan Gustafsson, Melissa Burke] toc: false --- From d31da48ef85e693246388ec863dabd3c99f81ba7 Mon Sep 17 00:00:00 2001 From: Johan Gustafsson Date: Thu, 10 Jul 2025 08:53:45 +0930 Subject: [PATCH 2/6] update tiles-simple.html and join_conversation.md --- _includes/tiles-simple.html | 74 +++++++++++++++++++++++++++++++------ pages/join_conversation.md | 2 + 2 files changed, 64 insertions(+), 12 deletions(-) diff --git a/_includes/tiles-simple.html b/_includes/tiles-simple.html index 885acdf..f3a92f5 100644 --- a/_includes/tiles-simple.html +++ b/_includes/tiles-simple.html @@ -1,14 +1,64 @@ -
- {%- if include.yaml %} - {%- assign tiles = site.data.tiles[include.target] %} - {% else %} - {%- assign tiles = page[include.target] %} - {%- endif %} - {%- for item in tiles %} - {%- if item.title %} -
- {{item.title}} +{%- if include.yaml %} +{%- assign tiles = site.data.tiles[include.target] %} +{% else %} +{%- assign tiles = page[include.target] %} +{%- endif %} +
+
+
+ {%- for item in tiles %} + {%- if item.title %} + +
+
+

{{ item.title }}

+
+
+ + {%- endif %} + {%- endfor %} +
- {%- endif %} - {%- endfor %}
+ + + \ No newline at end of file diff --git a/pages/join_conversation.md b/pages/join_conversation.md index 9070df1..a026065 100644 --- a/pages/join_conversation.md +++ b/pages/join_conversation.md @@ -14,6 +14,8 @@ If you would like to, there are multiple ways to join the conversation: {% include tiles-simple.html col = "2" target = "tiles" %} +
+ If you join the mailing list (below), you will receive community updates and automatic community meeting invitations. ### Mailing list From c7070c8eca469449603a080fd287aff9b95ca0db Mon Sep 17 00:00:00 2001 From: Johan Gustafsson Date: Thu, 10 Jul 2025 08:56:24 +0930 Subject: [PATCH 3/6] modify section-navigation-tiles_mod.html --- _includes/section-navigation-tiles_mod.html | 132 ++++++++++++++++++-- 1 file changed, 123 insertions(+), 9 deletions(-) diff --git a/_includes/section-navigation-tiles_mod.html b/_includes/section-navigation-tiles_mod.html index 96d95bb..e698623 100644 --- a/_includes/section-navigation-tiles_mod.html +++ b/_includes/section-navigation-tiles_mod.html @@ -10,20 +10,67 @@
{%- for page in pages_to_add_as_tiles -%} {%- if page.type == include.type %} - + {%- if page.roadmap_category == "none" %} +

{{ page.title }}

{% if page.description %}

{{ page.description }}

{% endif %} - {% if page.roadmap %} -

{{ page.roadmap }}

+
+
+ + {% endif %} + {%- if page.roadmap_category == "D1" %} + +
+
+

{{ page.title }}

+ {% if page.description %} +

{{ page.description }}

+ {% endif %} +
+
+ + {% endif %} + {%- if page.roadmap_category == "D2" %} + +
+
+

{{ page.title }}

+ {% if page.description %} +

{{ page.description }}

+ {% endif %} +
+
+ + {% endif %} + {%- if page.roadmap_category == "D3" %} + +
+
+

{{ page.title }}

+ {% if page.description %} +

{{ page.description }}

{% endif %}
- - {%- endif %} + + {% endif %} + {%- if page.roadmap_category == "D4" %} + +
+
+

{{ page.title }}

+ {% if page.description %} +

{{ page.description }}

+ {% endif %} +
+
+ + {% endif %} + {% endif %} {%- endfor -%}
@@ -44,11 +91,54 @@

{{ page.title }}

} .page-tile-item { - border: 1px solid #e0e0e0; border-radius: 12px; padding: 25px; transition: all 0.3s ease; - background: #012152; + background: #9c9c9c; + width: 100%; + display: flex; + flex-direction: column; + justify-content: space-between; + } + + .page-tile-item-D1 { + border-radius: 12px; + padding: 25px; + transition: all 0.3s ease; + background: #a4c2f4ff; + width: 100%; + display: flex; + flex-direction: column; + justify-content: space-between; + } + + .page-tile-item-D2 { + border-radius: 12px; + padding: 25px; + transition: all 0.3s ease; + background: #6d9eebff; + width: 100%; + display: flex; + flex-direction: column; + justify-content: space-between; + } + + .page-tile-item-D3 { + border-radius: 12px; + padding: 25px; + transition: all 0.3s ease; + background: #1155ccff; + width: 100%; + display: flex; + flex-direction: column; + justify-content: space-between; + } + + .page-tile-item-D4 { + border-radius: 12px; + padding: 25px; + transition: all 0.3s ease; + background: #1c4587ff; width: 100%; display: flex; flex-direction: column; @@ -58,7 +148,31 @@

{{ page.title }}

.page-tile-item:hover { transform: translateY(-4px); box-shadow: 0 8px 25px rgba(0,0,0,0.1); - border-color: #012152; + border: 1px solid #000000; + } + + .page-tile-item-D1:hover { + transform: translateY(-4px); + box-shadow: 0 8px 25px rgba(0,0,0,0.1); + border: 1px solid #000000; + } + + .page-tile-item-D2:hover { + transform: translateY(-4px); + box-shadow: 0 8px 25px rgba(0,0,0,0.1); + border: 1px solid #000000; + } + + .page-tile-item-D3:hover { + transform: translateY(-4px); + box-shadow: 0 8px 25px rgba(0,0,0,0.1); + border: 1px solid #000000; + } + + .page-tile-item-D4:hover { + transform: translateY(-4px); + box-shadow: 0 8px 25px rgba(0,0,0,0.1); + border: 1px solid #000000; } .page-tile-roadmap { @@ -67,7 +181,7 @@

{{ page.title }}

font-weight: 700; padding: 4px 10px; background-color: #eef2f9; - color: #012152; + color: #141414; border-radius: 20px; margin-bottom: 12px; } From 7873b4b27f5afb4897beb329c24886791f9f526f Mon Sep 17 00:00:00 2001 From: Johan Gustafsson Date: Thu, 10 Jul 2025 08:58:39 +0930 Subject: [PATCH 4/6] add legend to activities.md --- pages/activities.md | 73 ++++++++++++++++++++++++++++++++++++++++++++- 1 file changed, 72 insertions(+), 1 deletion(-) diff --git a/pages/activities.md b/pages/activities.md index 4467fff..4cfdb9a 100644 --- a/pages/activities.md +++ b/pages/activities.md @@ -1,10 +1,81 @@ --- -title: Community Activities +title: Community activities page_id: activities #type: resources toc: false --- +
+
+

Roadmap deliverable 1: An Australian Structural Biology community space capable of fostering collaboration and knowledge sharing

+
+
+
+
+

Roadmap deliverable 2: A computational structural biology training program, developed in conjunction with the community

+
+
+
+
+

Roadmap deliverable 3: A shared platform, or platforms, for computational structural biology

+
+
+
+
+

Roadmap deliverable 4: Alignment, adoption and contribution to global best-practice efforts

+
+
+ + ## In progress From 0b51db8a8f4bef33f5e90958c1d180d02dc4ca39 Mon Sep 17 00:00:00 2001 From: Thomas Litfin Date: Thu, 10 Jul 2025 14:14:24 +1000 Subject: [PATCH 5/6] Add white border to simple-tiles to avoid jitter on hover --- _includes/tiles-simple.html | 8 +------- index.md | 2 +- 2 files changed, 2 insertions(+), 8 deletions(-) diff --git a/_includes/tiles-simple.html b/_includes/tiles-simple.html index f3a92f5..abc4523 100644 --- a/_includes/tiles-simple.html +++ b/_includes/tiles-simple.html @@ -5,7 +5,7 @@ {%- endif %}
-
+
{%- for item in tiles %} {%- if item.title %} @@ -24,12 +24,6 @@