From 9a537376ae0399934e260e1df15657e920ecda53 Mon Sep 17 00:00:00 2001 From: Thomas Litfin Date: Mon, 28 Jul 2025 14:48:55 +1000 Subject: [PATCH 1/4] Add new design seminar --- _data/events.yml | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/_data/events.yml b/_data/events.yml index 872ee1e..0ba58c9 100644 --- a/_data/events.yml +++ b/_data/events.yml @@ -32,7 +32,7 @@ startDate: 2025-07-15 endDate: 2025-07-15 description: "**Topic:** Using AI protein design to design binding proteins to challenging bacterial transporters." - url: https://www.eventbrite.com.au/e/webinar-leveraging-deep-learning-to-design-custom-protein-binding-proteins-tickets-1414347163439?aff=oddtdtcreator + url: https://www.youtube.com/watch?v=3Ad2gUjeSL8 location: Online - name: Protein design seminar series startDate: 2025-08-12 @@ -63,4 +63,10 @@ endDate: 2025-11-11 description: "**Topic:** TBD" url: https://www.eventbrite.com.au/e/webinar-leveraging-deep-learning-to-design-custom-protein-binding-proteins-tickets-1414347163439?aff=oddtdtcreator + location: Online +- name: Protein design seminar series + startDate: 2025-12-03 + endDate: 2025-12-03 + description: "**Topic:** Baby steps in the AI-guided design of proteins to module gene transcription" + url: https://www.eventbrite.com.au/e/webinar-leveraging-deep-learning-to-design-custom-protein-binding-proteins-tickets-1414347163439?aff=oddtdtcreator location: Online \ No newline at end of file From d926cfb1952869c79f9787cbb4097d8fd657b954 Mon Sep 17 00:00:00 2001 From: Thomas Litfin Date: Mon, 28 Jul 2025 14:51:36 +1000 Subject: [PATCH 2/4] Add recording to design seminar 1 --- pages/activities/protein_design_seminars.md | 17 +++++++++-------- 1 file changed, 9 insertions(+), 8 deletions(-) diff --git a/pages/activities/protein_design_seminars.md b/pages/activities/protein_design_seminars.md index 6a8709f..550e103 100644 --- a/pages/activities/protein_design_seminars.md +++ b/pages/activities/protein_design_seminars.md @@ -7,7 +7,7 @@ roadmap_category: D2 contributors: [Rhys Grinter, Gavin Knott, Cyntia Taveneau, Josh Hardy, Kate Michie, Johan Gustafsson, Melissa Burke] toc: false --- - + ## Details @@ -17,11 +17,12 @@ toc: false Registration is **[available here](https://www.eventbrite.com.au/e/webinar-leveraging-deep-learning-to-design-custom-protein-binding-proteins-tickets-1414347163439?aff=oddtdtcreator)**. -| Date | Time | Speaker(s) | Topic | -|---------------|------------|--------------------|-------| -| 15 July | 12pm AEST | Rhys Grinter | Using AI protein design to design binding proteins to challenging bacterial transporters | -| 12 August | 12pm AEST | Cyntia Taveneau | Icrs: AI-Designed Anti-CRISPRs as Programmable CRISPR Inhibitors | -| 16 September | 12pm AEST | Richard Birkinshaw | Using in silico design methods to create de novo proteins that selectively modulate apoptosis | -| 7 October | 12pm AEST* | Josh Hardy | Introducing ProteinDJ: A modular and open-source framework for protein design workflows | -| 11 November | 12pm AEST* | TBC | TBC | +| Date | Time | Speaker(s) | Topic | Recording | Presentation | +|---------------|------------|--------------------|-------|-----------|----------| +| 15 July | 12pm AEST | Rhys Grinter | Using AI protein design to design binding proteins to challenging bacterial transporters | [YouTube](https://youtu.be/3Ad2gUjeSL8) | [Zenodo](https://doi.org/10.5281/zenodo.16511653)| +| 12 August | 12pm AEST | Cyntia Taveneau | Icrs: AI-Designed Anti-CRISPRs as Programmable CRISPR Inhibitors | | | +| 16 September | 12pm AEST | Richard Birkinshaw | Using in silico design methods to create de novo proteins that selectively modulate apoptosis | | | +| 7 October | 12pm AEDT* | Josh Hardy | Introducing ProteinDJ: A modular and open-source framework for protein design workflows | | | +| 11 November | 12pm AEDT* | TBC | TBC | | | +| 3 December | 1pm AEDT* | Joel Mackay | Baby steps in the AI-guided design of proteins to module gene transcription | | | | *Affected by daylight savings | \ No newline at end of file From 19196aeb06ac53483e42316f0675dcd533b41cb2 Mon Sep 17 00:00:00 2001 From: Thomas Litfin Date: Mon, 28 Jul 2025 14:52:10 +1000 Subject: [PATCH 3/4] Add design seminar video to landing page --- _includes/tiles-simple.html | 2 +- _includes/video-list-columns.html | 15 +++++++++++++++ index.md | 5 +++++ 3 files changed, 21 insertions(+), 1 deletion(-) create mode 100644 _includes/video-list-columns.html diff --git a/_includes/tiles-simple.html b/_includes/tiles-simple.html index 850ab09..e9ef7db 100644 --- a/_includes/tiles-simple.html +++ b/_includes/tiles-simple.html @@ -35,7 +35,7 @@ border-radius: 12px; padding: 25px; transition: all 0.3s ease; - background: #1c4587ff; + background: #012152;; width: 100%; display: flex; flex-direction: column; diff --git a/_includes/video-list-columns.html b/_includes/video-list-columns.html new file mode 100644 index 0000000..064b594 --- /dev/null +++ b/_includes/video-list-columns.html @@ -0,0 +1,15 @@ +
+
+ +
+
+
    + {% assign items = include.list | split: "|" %} + {% for item in items %} +
  • {{ item }}
    • + {% endfor %} +
+
+
+ \ No newline at end of file diff --git a/index.md b/index.md index b46c1aa..7b3a94a 100644 --- a/index.md +++ b/index.md @@ -17,6 +17,11 @@ This website is a virtual meeting place and hub for all users of **computing for {% include tiles-simple.html target = "tiles" col = "2" %} +## Protein design seminar series + +{% include video-list-columns.html + video_id="3Ad2gUjeSL8?si=T2Md7RwXn7YWl1S7" + list="The protein design seminar series includes 6 presentations from Australian structural biologists utilizing the latest developments in de novo protein design to develop protein binders to various therapeutic targets.|Watch Dr Rhys Grinter share a recent project involving the development of protein binders to a protein target involved in heme piracy.|The next event in the series will be on August 12th and will describe AI-Designed Anti-CRISPRs as Programmable CRISPR Inhibitors." %} ## Upcoming Events From 52b7fcb5ac6364afe6fe64c046b88daf2d5e5080 Mon Sep 17 00:00:00 2001 From: Thomas Litfin Date: Mon, 28 Jul 2025 15:12:51 +1000 Subject: [PATCH 4/4] Minor copy update to landing page --- index.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/index.md b/index.md index 7b3a94a..3f3a8b9 100644 --- a/index.md +++ b/index.md @@ -21,7 +21,7 @@ This website is a virtual meeting place and hub for all users of **computing for {% include video-list-columns.html video_id="3Ad2gUjeSL8?si=T2Md7RwXn7YWl1S7" - list="The protein design seminar series includes 6 presentations from Australian structural biologists utilizing the latest developments in de novo protein design to develop protein binders to various therapeutic targets.|Watch Dr Rhys Grinter share a recent project involving the development of protein binders to a protein target involved in heme piracy.|The next event in the series will be on August 12th and will describe AI-Designed Anti-CRISPRs as Programmable CRISPR Inhibitors." %} + list="The protein design seminar series includes 6 presentations from Australian structural biologists utilizing the latest developments in de novo protein design to develop protein binders to various therapeutic targets.|Watch Dr Rhys Grinter share a recent project involving the development of protein binders to a protein target involved in heme piracy.|The full series schedule, seminar registration link and recordings of completed seminars are available here.|The next event in the series will be on August 12th and will describe AI-Designed Anti-CRISPRs as Programmable CRISPR Inhibitors." %} ## Upcoming Events