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Merged
supernord merged 4 commits into from
Jul 28, 2025
Merged

Update protein design seminar event #48

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9a53737
Add new design seminar
tlitfin Jul 28, 2025
d926cfb
Add recording to design seminar 1
tlitfin Jul 28, 2025
19196ae
Add design seminar video to landing page
tlitfin Jul 28, 2025
52b7fcb
Minor copy update to landing page
tlitfin Jul 28, 2025
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8 changes: 7 additions & 1 deletion _data/events.yml
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Expand Up @@ -32,7 +32,7 @@
startDate: 2025-07-15
endDate: 2025-07-15
description: "**Topic:** Using AI protein design to design binding proteins to challenging bacterial transporters."
url: https://www.eventbrite.com.au/e/webinar-leveraging-deep-learning-to-design-custom-protein-binding-proteins-tickets-1414347163439?aff=oddtdtcreator
url: https://www.youtube.com/watch?v=3Ad2gUjeSL8
location: Online
- name: Protein design seminar series
startDate: 2025-08-12
Expand Down Expand Up @@ -63,4 +63,10 @@
endDate: 2025-11-11
description: "**Topic:** TBD"
url: https://www.eventbrite.com.au/e/webinar-leveraging-deep-learning-to-design-custom-protein-binding-proteins-tickets-1414347163439?aff=oddtdtcreator
location: Online
- name: Protein design seminar series
startDate: 2025-12-03
endDate: 2025-12-03
description: "**Topic:** Baby steps in the AI-guided design of proteins to module gene transcription"
url: https://www.eventbrite.com.au/e/webinar-leveraging-deep-learning-to-design-custom-protein-binding-proteins-tickets-1414347163439?aff=oddtdtcreator
location: Online
2 changes: 1 addition & 1 deletion _includes/tiles-simple.html
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border-radius: 12px;
padding: 25px;
transition: all 0.3s ease;
background: #1c4587ff;
background: #012152;;
width: 100%;
display: flex;
flex-direction: column;
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15 changes: 15 additions & 0 deletions _includes/video-list-columns.html
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<div style="display: flex; gap: 20px; align-items: center;">
<div style="flex: 1;">
<iframe style="width: 100%; aspect-ratio: 560 / 315;" src="https://www.youtube.com/embed/{{ include.video_id }}"
frameborder="0" allowfullscreen></iframe>
</div>
<div style="flex: 1;">
<ul>
{% assign items = include.list | split: "|" %}
{% for item in items %}
<li>{{ item }}</li>
{% endfor %}
</ul>
</div>
</div>

5 changes: 5 additions & 0 deletions index.md
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Expand Up @@ -17,6 +17,11 @@ This website is a virtual meeting place and hub for all users of **computing for

{% include tiles-simple.html target = "tiles" col = "2" %}

## Protein design seminar series

{% include video-list-columns.html
video_id="3Ad2gUjeSL8?si=T2Md7RwXn7YWl1S7"
list="The protein design seminar series includes <b>6 presentations</b> from Australian structural biologists utilizing the latest developments in <i>de novo</i> protein design to develop protein binders to various therapeutic targets.|Watch <b>Dr Rhys Grinter</b> share a recent project involving the development of protein binders to a protein target involved in heme piracy.|The full series schedule, seminar registration link and recordings of completed seminars are available <b><a href=\"/protein_design_seminars\">here</a></b>.|The next event in the series will be on <b>August 12th</b> and will describe AI-Designed Anti-CRISPRs as Programmable CRISPR Inhibitors." %}

## Upcoming Events

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17 changes: 9 additions & 8 deletions pages/activities/protein_design_seminars.md
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Expand Up @@ -7,7 +7,7 @@ roadmap_category: D2
contributors: [Rhys Grinter, Gavin Knott, Cyntia Taveneau, Josh Hardy, Kate Michie, Johan Gustafsson, Melissa Burke]
toc: false
---
<!-- TODO: Add Richard Birkinshaw -->
<!-- TODO: Add Richard Birkinshaw and Joel Mackay-->

## Details

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Registration is **[available here](https://www.eventbrite.com.au/e/webinar-leveraging-deep-learning-to-design-custom-protein-binding-proteins-tickets-1414347163439?aff=oddtdtcreator)**.

| Date | Time | Speaker(s) | Topic |
|---------------|------------|--------------------|-------|
| 15 July | 12pm AEST | Rhys Grinter | Using AI protein design to design binding proteins to challenging bacterial transporters |
| 12 August | 12pm AEST | Cyntia Taveneau | Icrs: AI-Designed Anti-CRISPRs as Programmable CRISPR Inhibitors |
| 16 September | 12pm AEST | Richard Birkinshaw | Using in silico design methods to create de novo proteins that selectively modulate apoptosis |
| 7 October | 12pm AEST* | Josh Hardy | Introducing ProteinDJ: A modular and open-source framework for protein design workflows |
| 11 November | 12pm AEST* | TBC | TBC |
| Date | Time | Speaker(s) | Topic | Recording | Presentation |
|---------------|------------|--------------------|-------|-----------|----------|
| 15 July | 12pm AEST | Rhys Grinter | Using AI protein design to design binding proteins to challenging bacterial transporters | [YouTube](https://youtu.be/3Ad2gUjeSL8) | [Zenodo](https://doi.org/10.5281/zenodo.16511653)|
| 12 August | 12pm AEST | Cyntia Taveneau | Icrs: AI-Designed Anti-CRISPRs as Programmable CRISPR Inhibitors | | |
| 16 September | 12pm AEST | Richard Birkinshaw | Using in silico design methods to create de novo proteins that selectively modulate apoptosis | | |
| 7 October | 12pm AEDT* | Josh Hardy | Introducing ProteinDJ: A modular and open-source framework for protein design workflows | | |
| 11 November | 12pm AEDT* | TBC | TBC | | |
| 3 December | 1pm AEDT* | Joel Mackay | Baby steps in the AI-guided design of proteins to module gene transcription | | |
| *Affected by daylight savings |
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