diff --git a/_data/CONTRIBUTORS.yml b/_data/CONTRIBUTORS.yml index b465075..481d341 100644 --- a/_data/CONTRIBUTORS.yml +++ b/_data/CONTRIBUTORS.yml @@ -93,7 +93,7 @@ Gavin Knott: orcid: 0000-0002-9007-6273 Rhys Grinter: - affiliation: Lab head, University of Melbourne + affiliation: Lab head, The University of Melbourne git: RhysWG orcid: 0000-0002-8195-5348 @@ -113,4 +113,30 @@ Melissa Burke: Cyntia Taveneau: affiliation: Research Fellow, Knott Lab, Monash University - orcid: 0000-0002-3395-4957 \ No newline at end of file + orcid: 0000-0002-3395-4957 + +Charlie Bond: + affiliation: Professor, The University of Western Australia + github: charlie-bond + orcid: 0000-0002-9584-6783 + +Joel Mackay: + affiliation: Professor, School of Life and Environmental Sciences, University of Sydney + orcid: 0000-0001-7508-8033 + +Michael Parker: + affiliation: Director, Bio21 Institute, The University of Melbourne + orcid: 0000-0002-3101-1138 + image_url: /images/contributors/Parker_M.jpg + +Craig Morton: + affiliation: Principal Research Scientist, CSIRO + orcid: 0000-0001-5452-5193 + +Brett Collins: + affiliation: Professor, Institute for Molecular Bioscience, The University of Queensland + orcid: 0000-0002-6070-3774 + +Begoña Heras: + affiliation: Professor in Biochemistry, La Trobe University + orcid: 0000-0003-3469-7988 \ No newline at end of file diff --git a/_data/affiliations.yml b/_data/affiliations.yml index c486bb8..831057d 100644 --- a/_data/affiliations.yml +++ b/_data/affiliations.yml @@ -23,3 +23,8 @@ expose: true type: infrastructure url: https://www.uq.edu.au/ +- name: Bio21 Institute + image_url: /images/infrastructures/Bio21_logo.jpg + expose: true + type: infrastructure + url: https://www.bio21.unimelb.edu.au/ \ No newline at end of file diff --git a/images/contributors/Parker_M.jpg b/images/contributors/Parker_M.jpg new file mode 100644 index 0000000..7be7ada Binary files /dev/null and b/images/contributors/Parker_M.jpg differ diff --git a/images/infrastructures/Bio21_logo.jpg b/images/infrastructures/Bio21_logo.jpg new file mode 100644 index 0000000..12232f8 Binary files /dev/null and b/images/infrastructures/Bio21_logo.jpg differ diff --git a/index.md b/index.md index d083fa8..378d498 100644 --- a/index.md +++ b/index.md @@ -21,7 +21,7 @@ This website is a virtual meeting place and hub for all users of **computing for {% include video-list-columns.html video_id="3Ad2gUjeSL8?si=T2Md7RwXn7YWl1S7" - list="The protein design seminar series includes 6 presentations from Australian structural biologists utilising the latest developments in de novo protein design to develop protein binders to various therapeutic targets.|Watch Dr Rhys Grinter share a recent project involving the development of protein binders to a protein target involved in heme piracy.|The full series schedule, seminar registration link and recordings of completed seminars are available here.|The next event in the series will be on August 12th and will describe AI-Designed Anti-CRISPRs as Programmable CRISPR Inhibitors." %} + list="The protein design seminar series includes 6 presentations from Australian structural biologists utilising the latest developments in de novo protein design to develop protein binders to various therapeutic targets.|Watch Dr Rhys Grinter share a recent project involving the development of protein binders to a protein target involved in heme piracy.|The full series schedule, seminar registration link and recordings of completed seminars are available here.|The next event in the series will be on September 16th and will describe using in silico design methods to create de novo proteins that selectively modulate apoptosis." %} ## Upcoming Events diff --git a/pages/activities/infrastructure_roadmap.md b/pages/activities/infrastructure_roadmap.md index c9efa01..be8a066 100644 --- a/pages/activities/infrastructure_roadmap.md +++ b/pages/activities/infrastructure_roadmap.md @@ -2,6 +2,7 @@ title: Infrastructure Roadmap description: Draft and publish an Australian infrastructure roadmap for addressing computational challenges facing structural biology. type: activity_completed +contributors: [Kate Michie, Thomas Litfin, Sarah Beecroft, Brett Collins, Matthew Downton, Rhys Grinter, Gavin Knott, Johan Gustafsson, Charlie Bond, Joel Mackay, Michael Parker, Craig Morton, Begoña Heras] roadmap: Community co-authored document roadmap_category: none toc: false diff --git a/pages/activities/nci_data_collections.md b/pages/activities/nci_data_collections.md index 7a15dd9..f28af95 100644 --- a/pages/activities/nci_data_collections.md +++ b/pages/activities/nci_data_collections.md @@ -21,7 +21,7 @@ This activity aims to create a stable release of up-to-date reference data (with - Catalog latest version of reference data. - Harmonize data across different structure prediction models (AlphaFold2, AlphaFold3, Boltz, ColabFold, HelixFold3, RosettaFold-AA). +- NCI Data Collection expression of interest (Accepted). ### In Progress - -- NCI Data Collection EOI. \ No newline at end of file +- Provision new NCI project for storage an data management. \ No newline at end of file diff --git a/pages/activities/nfcore_proteinfold.md b/pages/activities/nfcore_proteinfold.md index 8baca22..afcd1e3 100644 --- a/pages/activities/nfcore_proteinfold.md +++ b/pages/activities/nfcore_proteinfold.md @@ -19,16 +19,20 @@ toc: false ### Completed - Config optimized for efficient utilization for Gadi at NCI. -- Add RosettaFold-All-Atom. -- Add HelixFold3. -- Add Boltz-1. -- Add AlphaFold3 (BYO weights). -- Add support for local MSA search for Boltz-1. +- Add new tools to the ProteinFold pipeline: + - RosettaFold-All-Atom. + - HelixFold3. + - Boltz-1. + - Boltz-2. + - AlphaFold3 (BYO weights). +- Add support for local MSA search for Boltz. - Add standardized reporting with visualisation. -- Add support for quality metrics in output reporting. +- Add standard QC metrics to HTML report. - Add process labels to improve efficient use of infrastructure. +- De-duplicate reference datasets across different methods. ### In Progress - Add minituare reference databases for fast troubleshooting. -- De-duplicate reference datasets across different methods. \ No newline at end of file +- Update documentation and metro-map. +- Test for release. \ No newline at end of file diff --git a/pages/contributing/contributing.md b/pages/contributing/contributing.md index 801654a..d9f39cf 100644 --- a/pages/contributing/contributing.md +++ b/pages/contributing/contributing.md @@ -3,6 +3,7 @@ title: Contributing page_id: contributing toc: false #type: resources +toc: false --- {% include callout.html type="important" content="Contributing guidelines will be available soon." %} diff --git a/pages/contributors.md b/pages/contributors.md index 6e3d90f..5813964 100644 --- a/pages/contributors.md +++ b/pages/contributors.md @@ -3,6 +3,7 @@ title: Community contributors page_id: contributors toc: false #type: resources +toc: false --- The projects included here represent a joint effort by the following people at multiple Australian institutions: diff --git a/pages/external_resources.md b/pages/external_resources.md index 15682bd..fe2e8fd 100644 --- a/pages/external_resources.md +++ b/pages/external_resources.md @@ -3,6 +3,7 @@ title: External Resources page_id: external_resources #datatable: true #type: resources +toc: false --- diff --git a/pages/guides.md b/pages/guides.md index 4b15b28..af13b2d 100644 --- a/pages/guides.md +++ b/pages/guides.md @@ -5,6 +5,7 @@ page_id: guides toc: false #type: resources datatable: true +toc: false --- {% include section-navigation-tiles.html type="guide"%} diff --git a/pages/join_conversation.md b/pages/join_conversation.md index 3b28104..89138ea 100644 --- a/pages/join_conversation.md +++ b/pages/join_conversation.md @@ -3,6 +3,7 @@ title: Join the conversation description: page_id: join toc: false + tiles: - title: "Quarterly community meetings" url: https://docs.google.com/document/d/1miRyOOOW7HeDsCvzJwVEOhaAzPBve8od9WUvsAsFfcw/edit#heading=h.owmugrvs22hi