Update content

_data/CONTRIBUTORS.yml

@@ -93,7 +93,7 @@ Gavin Knott:
     orcid: 0000-0002-9007-6273
 
 Rhys Grinter:
-    affiliation: Lab head, University of Melbourne
+    affiliation: Lab head, The University of Melbourne
     git: RhysWG
     orcid: 0000-0002-8195-5348
 
@@ -113,4 +113,30 @@ Melissa Burke:
 
 Cyntia Taveneau:
     affiliation: Research Fellow, Knott Lab, Monash University
-    orcid: 0000-0002-3395-4957
+    orcid: 0000-0002-3395-4957
+
+Charlie Bond:
+    affiliation: Professor, The University of Western Australia
+    github: charlie-bond
+    orcid: 0000-0002-9584-6783
+
+Joel Mackay:
+    affiliation: Professor, School of Life and Environmental Sciences, University of Sydney
+    orcid: 0000-0001-7508-8033
+
+Michael Parker:
+    affiliation: Director, Bio21 Institute, The University of Melbourne
+    orcid: 0000-0002-3101-1138
+    image_url: /images/contributors/Parker_M.jpg
+
+Craig Morton:
+    affiliation: Principal Research Scientist, CSIRO
+    orcid: 0000-0001-5452-5193
+
+Brett Collins:
+    affiliation: Professor, Institute for Molecular Bioscience, The University of Queensland
+    orcid: 0000-0002-6070-3774
+
+Begoña Heras:
+    affiliation: Professor in Biochemistry, La Trobe University
+    orcid: 0000-0003-3469-7988

_data/affiliations.yml

@@ -23,3 +23,8 @@
   expose: true
   type: infrastructure
   url: https://www.uq.edu.au/ 
+- name: Bio21 Institute
+  image_url: /images/infrastructures/Bio21_logo.jpg
+  expose: true
+  type: infrastructure
+  url: https://www.bio21.unimelb.edu.au/

index.md

@@ -21,7 +21,7 @@ This website is a virtual meeting place and hub for all users of **computing for
 
 {% include video-list-columns.html 
    video_id="3Ad2gUjeSL8?si=T2Md7RwXn7YWl1S7" 
-   list="The protein design seminar series includes <b>6 presentations</b> from Australian structural biologists utilising the latest developments in <i>de novo</i> protein design to develop protein binders to various therapeutic targets.|Watch <b>Dr Rhys Grinter</b> share a recent project involving the development of protein binders to a protein target involved in heme piracy.|The full series schedule, seminar registration link and recordings of completed seminars are available <b><a href=\"/website/protein_design_seminars\">here</a></b>.|The next event in the series will be on <b>August 12th</b> and will describe AI-Designed Anti-CRISPRs as Programmable CRISPR Inhibitors." %}
+   list="The protein design seminar series includes <b>6 presentations</b> from Australian structural biologists utilising the latest developments in <i>de novo</i> protein design to develop protein binders to various therapeutic targets.|Watch <b>Dr Rhys Grinter</b> share a recent project involving the development of protein binders to a protein target involved in heme piracy.|The full series schedule, seminar registration link and recordings of completed seminars are available <b><a href=\"/website/protein_design_seminars\">here</a></b>.|The next event in the series will be on <b>September 16th</b> and will describe using <i>in silico</i> design methods to create <i>de novo</i> proteins that selectively modulate apoptosis." %}
 
 ## Upcoming Events
 

pages/activities/infrastructure_roadmap.md

@@ -2,6 +2,7 @@
 title: Infrastructure Roadmap
 description: Draft and publish an Australian infrastructure roadmap for addressing computational challenges facing structural biology.
 type: activity_completed
+contributors: [Kate Michie, Thomas Litfin, Sarah Beecroft, Brett Collins, Matthew Downton, Rhys Grinter, Gavin Knott, Johan Gustafsson, Charlie Bond, Joel Mackay, Michael Parker, Craig Morton, Begoña Heras]
 roadmap: Community co-authored document
 roadmap_category: none
 toc: false

pages/activities/nci_data_collections.md

@@ -21,7 +21,7 @@ This activity aims to create a stable release of up-to-date reference data (with
 
 - Catalog latest version of reference data.
 - Harmonize data across different structure prediction models (AlphaFold2, AlphaFold3, Boltz, ColabFold, HelixFold3, RosettaFold-AA).
+- NCI Data Collection expression of interest (Accepted).
 
 ### In Progress
-
-- NCI Data Collection EOI.
+- Provision new NCI project for storage an data management.

pages/activities/nfcore_proteinfold.md

@@ -19,16 +19,20 @@ toc: false
 ### Completed
 
 - Config optimized for efficient utilization for Gadi at NCI.
-- Add RosettaFold-All-Atom.
-- Add HelixFold3.
-- Add Boltz-1.
-- Add AlphaFold3 (BYO weights).
-- Add support for local MSA search for Boltz-1.
+- Add new tools to the ProteinFold pipeline:
+    - RosettaFold-All-Atom.
+    - HelixFold3.
+    - Boltz-1.
+    - Boltz-2.
+    - AlphaFold3 (BYO weights).
+- Add support for local MSA search for Boltz.
 - Add standardized reporting with visualisation.
-- Add support for quality metrics in output reporting.
+- Add standard QC metrics to HTML report.
 - Add process labels to improve efficient use of infrastructure.
+- De-duplicate reference datasets across different methods.
 
 ### In Progress
 
 - Add minituare reference databases for fast troubleshooting.
-- De-duplicate reference datasets across different methods.
+- Update documentation and metro-map.
+- Test for release.

pages/contributing/contributing.md

@@ -3,6 +3,7 @@ title: Contributing
 page_id: contributing
 toc: false
 #type: resources
+toc: false
 ---
 
 {% include callout.html type="important" content="Contributing guidelines will be available soon." %}

pages/contributors.md

@@ -3,6 +3,7 @@ title: Community contributors
 page_id: contributors
 toc: false
 #type: resources
+toc: false
 ---
 
 The projects included here represent a joint effort by the following people at multiple Australian institutions: 

pages/external_resources.md

@@ -3,6 +3,7 @@ title: External Resources
 page_id: external_resources
 #datatable: true
 #type: resources
+toc: false
 ---
 
 <!-- {% include resource-table-all.html %} -->

pages/guides.md

@@ -5,6 +5,7 @@ page_id: guides
 toc: false
 #type: resources
 datatable: true
+toc: false
 ---
 
 {% include section-navigation-tiles.html type="guide"%}

pages/join_conversation.md

@@ -3,6 +3,7 @@ title: Join the conversation
 description: 
 page_id: join
 toc: false
+
 tiles:
   - title: "Quarterly community meetings"
     url: https://docs.google.com/document/d/1miRyOOOW7HeDsCvzJwVEOhaAzPBve8od9WUvsAsFfcw/edit#heading=h.owmugrvs22hi