From dab22186d2edf8fedff273107ee968ee67dcc00d Mon Sep 17 00:00:00 2001 From: Thomas Litfin Date: Tue, 26 Aug 2025 14:32:59 +1000 Subject: [PATCH 1/3] Add contributor --- _data/CONTRIBUTORS.yml | 7 ++++++- pages/activities/infrastructure_roadmap.md | 2 +- 2 files changed, 7 insertions(+), 2 deletions(-) diff --git a/_data/CONTRIBUTORS.yml b/_data/CONTRIBUTORS.yml index 481d341..d093c9e 100644 --- a/_data/CONTRIBUTORS.yml +++ b/_data/CONTRIBUTORS.yml @@ -139,4 +139,9 @@ Brett Collins: Begoña Heras: affiliation: Professor in Biochemistry, La Trobe University - orcid: 0000-0003-3469-7988 \ No newline at end of file + orcid: 0000-0003-3469-7988 + +Fiona Whelan: + affiliation: Group Leader in Biotechnology, Adelaide University + github: fionawhelan + orcid: 0000-0002-0791-6850 \ No newline at end of file diff --git a/pages/activities/infrastructure_roadmap.md b/pages/activities/infrastructure_roadmap.md index ad66c41..bc61b5d 100644 --- a/pages/activities/infrastructure_roadmap.md +++ b/pages/activities/infrastructure_roadmap.md @@ -2,7 +2,7 @@ title: Infrastructure Roadmap description: Draft and publish an Australian infrastructure roadmap for addressing computational challenges facing structural biology. type: activity_completed -contributors: [Kate Michie, Thomas Litfin, Sarah Beecroft, Brett Collins, Matthew Downton, Rhys Grinter, Gavin Knott, Johan Gustafsson, Charlie Bond, Joel Mackay, Michael Parker, Craig Morton, Begoña Heras] +contributors: [Kate Michie, Thomas Litfin, Sarah Beecroft, Brett Collins, Matthew Downton, Rhys Grinter, Gavin Knott, Johan Gustafsson, Charlie Bond, Joel Mackay, Michael Parker, Craig Morton, Begoña Heras, Fiona Whelan] roadmap: Community co-authored document roadmap_category: none toc: false From 8cf6af473ce3f33df47dd0f3b6d68d5214d8f55d Mon Sep 17 00:00:00 2001 From: Thomas Litfin Date: Tue, 26 Aug 2025 14:35:56 +1000 Subject: [PATCH 2/3] Update nci data collection --- pages/activities/nci_data_collections.md | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/pages/activities/nci_data_collections.md b/pages/activities/nci_data_collections.md index 797d2f5..e29718f 100644 --- a/pages/activities/nci_data_collections.md +++ b/pages/activities/nci_data_collections.md @@ -23,6 +23,11 @@ This activity aims to create a stable release of up-to-date reference data (with - Catalog latest version of reference data. - Harmonize data across different structure prediction models (AlphaFold2, AlphaFold3, Boltz, ColabFold, HelixFold3, RosettaFold-AA). - NCI Data Collection expression of interest (Accepted). +- Provision new NCI project for storage and data management. ### In Progress -- Provision new NCI project for storage an data management. \ No newline at end of file +- Populate structure prediction reference data in data collection project. + +### Future +- Validate reference data collection +- Mint DOI. \ No newline at end of file From 065c90551ca794500d50e2959e44cb2bdc69275d Mon Sep 17 00:00:00 2001 From: Thomas Litfin Date: Tue, 26 Aug 2025 14:42:51 +1000 Subject: [PATCH 3/3] Update design seminar series --- index.md | 4 ++-- pages/activities/protein_design_seminars.md | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/index.md b/index.md index 11d12d1..ba10920 100644 --- a/index.md +++ b/index.md @@ -20,8 +20,8 @@ This website is a virtual meeting place and hub for all users of **computing for ## Protein design seminar series {% include video-list-columns.html - video_id="3Ad2gUjeSL8?si=T2Md7RwXn7YWl1S7" - list="The protein design seminar series includes 6 presentations from Australian structural biologists utilising the latest developments in de novo protein design to develop protein binders to various therapeutic targets.|Watch Dr Rhys Grinter share a recent project involving the development of protein binders to a protein target involved in heme piracy.|The full series schedule, seminar registration link and recordings of completed seminars are available here.|The next event in the series will be on September 16th and will describe using in silico design methods to create de novo proteins that selectively modulate apoptosis." %} + video_id="GSoOfyJUYSA?si=M_npiU7MfdQHZzj9" + list="The protein design seminar series includes 6 presentations from Australian structural biologists utilising the latest developments in de novo protein design to develop protein binders to various therapeutic targets.|Watch Dr Cyntia Taveneau share a recent project involving AI-designed anti-CRISPRs as programmable CRISPR inhibitors.|The full series schedule, seminar registration link and recordings of completed seminars are available here.|The next event in the series will be on September 16th and will describe using in silico design methods to create de novo proteins that selectively modulate apoptosis." %} ## Upcoming Events diff --git a/pages/activities/protein_design_seminars.md b/pages/activities/protein_design_seminars.md index c6ed3a6..1d3fba4 100644 --- a/pages/activities/protein_design_seminars.md +++ b/pages/activities/protein_design_seminars.md @@ -21,7 +21,7 @@ redirect_from: /website/protein_design_seminars | Date | Time | Speaker(s) | Topic | Recording | Presentation | |---------------|------------|--------------------|-------|-----------|----------| | 15 July | 12pm AEST | Rhys Grinter | Using AI protein design to design binding proteins to challenging bacterial transporters | [YouTube](https://youtu.be/3Ad2gUjeSL8) | [Zenodo](https://doi.org/10.5281/zenodo.16511653)| -| 12 August | 12pm AEST | Cyntia Taveneau | AIcrs: AI-Designed Anti-CRISPRs as Programmable CRISPR Inhibitors | | | +| 12 August | 12pm AEST | Cyntia Taveneau | AIcrs: AI-Designed Anti-CRISPRs as Programmable CRISPR Inhibitors | [YouTube](https://www.youtube.com/watch?v=GSoOfyJUYSA) | | | 16 September | 12pm AEST | Richard Birkinshaw | Using in silico design methods to create de novo proteins that selectively modulate apoptosis | | | | 7 October | 12pm AEDT* | Josh Hardy | Introducing ProteinDJ: A modular and open-source framework for protein design workflows | | | | 11 November | 12pm AEDT* | TBC | TBC | | |