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Merged
supernord merged 3 commits into from
Aug 26, 2025
Merged

Updates #59

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dab2218
Add contributor
tlitfin Aug 26, 2025
8cf6af4
Update nci data collection
tlitfin Aug 26, 2025
065c905
Update design seminar series
tlitfin Aug 26, 2025
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7 changes: 6 additions & 1 deletion _data/CONTRIBUTORS.yml
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Expand Up @@ -139,4 +139,9 @@ Brett Collins:

Begoña Heras:
affiliation: Professor in Biochemistry, La Trobe University
orcid: 0000-0003-3469-7988
orcid: 0000-0003-3469-7988

Fiona Whelan:
affiliation: Group Leader in Biotechnology, Adelaide University
github: fionawhelan
orcid: 0000-0002-0791-6850
4 changes: 2 additions & 2 deletions index.md
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Expand Up @@ -20,8 +20,8 @@ This website is a virtual meeting place and hub for all users of **computing for
## Protein design seminar series

{% include video-list-columns.html
video_id="3Ad2gUjeSL8?si=T2Md7RwXn7YWl1S7"
list="The protein design seminar series includes <b>6 presentations</b> from Australian structural biologists utilising the latest developments in <i>de novo</i> protein design to develop protein binders to various therapeutic targets.|Watch <b>Dr Rhys Grinter</b> share a recent project involving the development of protein binders to a protein target involved in heme piracy.|The full series schedule, seminar registration link and recordings of completed seminars are available <b><a href=\"/protein_design_seminars\">here</a></b>.|The next event in the series will be on <b>September 16th</b> and will describe using <i>in silico</i> design methods to create <i>de novo</i> proteins that selectively modulate apoptosis." %}
video_id="GSoOfyJUYSA?si=M_npiU7MfdQHZzj9"
list="The protein design seminar series includes <b>6 presentations</b> from Australian structural biologists utilising the latest developments in <i>de novo</i> protein design to develop protein binders to various therapeutic targets.|Watch <b>Dr Cyntia Taveneau</b> share a recent project involving AI-designed anti-CRISPRs as programmable CRISPR inhibitors.|The full series schedule, seminar registration link and recordings of completed seminars are available <b><a href=\"/protein_design_seminars\">here</a></b>.|The next event in the series will be on <b>September 16th</b> and will describe using <i>in silico</i> design methods to create <i>de novo</i> proteins that selectively modulate apoptosis." %}

## Upcoming Events

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2 changes: 1 addition & 1 deletion pages/activities/infrastructure_roadmap.md
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Expand Up @@ -2,7 +2,7 @@
title: Infrastructure Roadmap
description: Draft and publish an Australian infrastructure roadmap for addressing computational challenges facing structural biology.
type: activity_completed
contributors: [Kate Michie, Thomas Litfin, Sarah Beecroft, Brett Collins, Matthew Downton, Rhys Grinter, Gavin Knott, Johan Gustafsson, Charlie Bond, Joel Mackay, Michael Parker, Craig Morton, Begoña Heras]
contributors: [Kate Michie, Thomas Litfin, Sarah Beecroft, Brett Collins, Matthew Downton, Rhys Grinter, Gavin Knott, Johan Gustafsson, Charlie Bond, Joel Mackay, Michael Parker, Craig Morton, Begoña Heras, Fiona Whelan]
roadmap: Community co-authored document
roadmap_category: none
toc: false
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7 changes: 6 additions & 1 deletion pages/activities/nci_data_collections.md
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Expand Up @@ -23,6 +23,11 @@ This activity aims to create a stable release of up-to-date reference data (with
- Catalog latest version of reference data.
- Harmonize data across different structure prediction models (AlphaFold2, AlphaFold3, Boltz, ColabFold, HelixFold3, RosettaFold-AA).
- NCI Data Collection expression of interest (Accepted).
- Provision new NCI project for storage and data management.

### In Progress
- Provision new NCI project for storage an data management.
- Populate structure prediction reference data in data collection project.

### Future
- Validate reference data collection
- Mint DOI.
2 changes: 1 addition & 1 deletion pages/activities/protein_design_seminars.md
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Expand Up @@ -21,7 +21,7 @@ redirect_from: /website/protein_design_seminars
| Date | Time | Speaker(s) | Topic | Recording | Presentation |
|---------------|------------|--------------------|-------|-----------|----------|
| 15 July | 12pm AEST | Rhys Grinter | Using AI protein design to design binding proteins to challenging bacterial transporters | [YouTube](https://youtu.be/3Ad2gUjeSL8) | [Zenodo](https://doi.org/10.5281/zenodo.16511653)|
| 12 August | 12pm AEST | Cyntia Taveneau | AIcrs: AI-Designed Anti-CRISPRs as Programmable CRISPR Inhibitors | | |
| 12 August | 12pm AEST | Cyntia Taveneau | AIcrs: AI-Designed Anti-CRISPRs as Programmable CRISPR Inhibitors | [YouTube](https://www.youtube.com/watch?v=GSoOfyJUYSA) | |
| 16 September | 12pm AEST | Richard Birkinshaw | Using in silico design methods to create de novo proteins that selectively modulate apoptosis | | |
| 7 October | 12pm AEDT* | Josh Hardy | Introducing ProteinDJ: A modular and open-source framework for protein design workflows | | |
| 11 November | 12pm AEDT* | TBC | TBC | | |
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