October update

_data/events.yml

@@ -61,18 +61,12 @@
 - name: Protein design seminar series
   startDate: 2025-11-11
   endDate: 2025-11-11
-  description: "**Topic:** TBD"
+  description: "**Topic:** Baby steps in the AI-guided design of proteins to module gene transcription"
   url: https://www.eventbrite.com.au/e/webinar-leveraging-deep-learning-to-design-custom-protein-binding-proteins-tickets-1414347163439?aff=oddtdtcreator
   location: Online
 - name: Australian Structural Biology Computing community meeting
   startDate: 2025-11-12
   endDate: 2025-11-12
   description: "Click to visit the rolling agenda and see details on how to join the next meeting."
   url: https://docs.google.com/document/d/1miRyOOOW7HeDsCvzJwVEOhaAzPBve8od9WUvsAsFfcw/edit#heading=h.owmugrvs22hi
-  location: Online
-- name: Protein design seminar series
-  startDate: 2025-12-03
-  endDate: 2025-12-03
-  description: "**Topic:** Baby steps in the AI-guided design of proteins to module gene transcription"
-  url: https://www.eventbrite.com.au/e/webinar-leveraging-deep-learning-to-design-custom-protein-binding-proteins-tickets-1414347163439?aff=oddtdtcreator
   location: Online

index.md

@@ -20,8 +20,8 @@ This website is a virtual meeting place and hub for all users of **computing for
 ## Protein design seminar series
 
 {% include video-list-columns.html 
-   video_id="9-3sHy1ybpE" 
-   list="The protein design seminar series includes <b>6 presentations</b> from Australian structural biologists utilising the latest developments in <i>de novo</i> protein design to develop protein binders to various therapeutic targets.|Watch <b>Dr Richard Birkinshaw</b> share a recent project using <i>in silico</i> design methods to create <i>de novo</i> proteins that selectively modulate apoptosis.|The full series schedule, seminar registration link and recordings of completed seminars are available <b><a href=\"/protein_design_seminars\">here</a></b>.|The next event in the series will be on <b>October 7th</b> and will describe ProteinDJ: A modular and open-source framework for protein design workflows" %}
+   video_id="xwvF62HxaF0" 
+   list="The protein design seminar series includes <b>5 presentations</b> from Australian structural biologists utilising the latest developments in <i>de novo</i> protein design to develop protein binders to various therapeutic targets.|Watch <b>Dr Josh Hardy</b> share a recent project describing the development of  ProteinDJ: A modular and open-source framework for protein design workflows.|The full series schedule, seminar registration link and recordings of completed seminars are available <b><a href=\"/protein_design_seminars\">here</a></b>.|The final event in the series will be on <b>November 11th</b> and will describe baby steps in the AI-guided design of proteins to modulate gene transcription." %}
 
 ## Upcoming Events
 

pages/activities/abacbs25_workshop.md

@@ -0,0 +1,23 @@
+---
+title: ABACBS 2025 workshop
+description: Leveraging peak Australian compute to enable workflows for predictive structural biology at scale
+type: activity_in_progress
+roadmap: A computational structural biology training program (Roadmap D2)
+roadmap_category: D2
+contributors: [Johan Gustafsson, Ziad Al-Bkhetan, Thomas Litfin, Sarah Beecroft, Georgie Samaha, Mitchell O'Brien, Farah Zaib Khan]
+toc: false
+redirect_from: /website/abacbs25_workshop
+---
+
+## Details
+
+Community members will present a [workshop](https://blackochrelabs.au/abacbs2025_workshops/) at the [ABACBS conference](https://www.abacbs.org/abacbs2025) in Adelaide describing structural biology workflows on national HPC infrastructure.
+
+### Abstract
+
+Deep learning for structural biology has numerous applications, ranging from basic research through to clinical application. A key challenge with these approaches is accessibility, and much work is currently being conducted to develop computational workflows to improve this access. However, building, executing, and sharing workflows is challenging. The difficulty only increases when implementing novel approaches like deep learning, and even more so when moving these workflows to national infrastructure to operate at scale. Some of the challenges include knowing how to develop a workflow to optimise use of these large compute systems, how to configure and deploy workflows that can efficiently employ both CPU and GPU, and how to share the workflows created so that others can find, understand, reuse, and ultimately cite the workflow. This workshop will examine these challenges from the perspective of a workflow’s life cycle, and in doing so provide both theory and hands-on activities that will support bioinformaticians to develop, execute, and share computational workflows for structural biology at scale.
+
+### Content
+
+- Presentation Slides coming soon
+- Workshop content coming soon

pages/activities/protein_design_seminars.md

@@ -23,7 +23,6 @@ redirect_from: /website/protein_design_seminars
 | 15 July       | 12pm AEST  | Rhys Grinter       | Using AI protein design to design binding proteins to challenging bacterial transporters | [YouTube](https://youtu.be/3Ad2gUjeSL8) | [Zenodo](https://doi.org/10.5281/zenodo.16511653) |
 | 12 August     | 12pm AEST  | Cyntia Taveneau    | AIcrs: AI-Designed Anti-CRISPRs as Programmable CRISPR Inhibitors | [YouTube](https://www.youtube.com/watch?v=GSoOfyJUYSA) | [Zenodo](https://doi.org/10.5281/zenodo.17033916) |
 | 16 September  | 12pm AEST  | Richard Birkinshaw | Using in silico design methods to create de novo proteins that selectively modulate apoptosis | [YouTube](https://youtu.be/9-3sHy1ybpE) | [Zenodo](https://doi.org/10.5281/zenodo.17148914) |
-| 7 October     | 12pm AEDT* | Josh Hardy | Introducing ProteinDJ: A modular and open-source framework for protein design workflows | | |
-| 11 November   | 12pm AEDT* | TBC | TBC | | |
-| 3 December    | 1pm AEDT*  | Joel Mackay | Baby steps in the AI-guided design of proteins to module gene transcription | | |
+| 7 October     | 12pm AEDT* | Josh Hardy | Introducing ProteinDJ: A modular and open-source framework for protein design workflows | [YouTube](https://www.youtube.com/watch?v=xwvF62HxaF0) | [Zenodo](https://zenodo.org/records/17337232) |
+| 11 November   | 12pm AEDT* | Joel Mackay | Baby steps in the AI-guided design of proteins to module gene transcription | | |
 | *Affected by daylight savings |