Australian-Structural-Biology-Computing · tlitfin · Apr 15, 2026 · Mar 10, 2026 · Mar 10, 2026 · Mar 10, 2026
diff --git a/_data/CONTRIBUTORS.yml b/_data/CONTRIBUTORS.yml
@@ -27,13 +27,13 @@ Keiran Rowell:
     git: keiran-rowell-unsw 
     email: k.rowell@unsw.edu.au
     orcid: 0000-0001-6955-1167
-    affiliation: Computational Scientist, Structural Biology Facility UNSW
+    affiliation: Computational Scientist, Structural Biology Facility, UNSW
 
-Kate Michie:
+Katharine Michie:
     git: katemichie 
     email: k.michie@unsw.edu.au
     orcid: 0000-0002-2133-2237
-    affiliation: Chief Scientist, Structural Biology Facility UNSW
+    affiliation: Chief Scientist, Structural Biology Facility, UNSW
 
 James Lingford:
     git:  jlingford
@@ -57,7 +57,7 @@ Thomas Litfin:
     git:  tlitfin-unsw 
     email: t.litfin@unsw.edu.au 
     orcid: 0000-0002-4863-3865
-    affiliation: Senior Research Associate, Structural Biology Facility UNSW
+    affiliation: Senior Research Associate, Structural Biology Facility, UNSW
 
 Ziad Al-Bkhetan:
     git:  ziadbkh
@@ -159,4 +159,18 @@ Farah Zaib Khan:
 Sehrish Kanwal:
     affiliation: Senior Research Fellow (Bioinformatics), The University of Melbourne
     git: skanwal
-    orcid: https://orcid.org/0000-0002-5044-4692
+    orcid: https://orcid.org/0000-0002-5044-4692
+
+Paulyna Magaña:
+    affiliation: Protein Data Bank in Europe (PDBe) European Bioinformatics Institute (EMBL-EBI)
+    git: paulynamagana
+    orcid: https://orcid.org/0009-0004-1524-2966
+
+Kristina Gagalova:
+    affiliation: Curtin University and Centre for Crop and Disease Management (CCDM), Perth, Australia
+    git: KristinaGagalova
+    orcid: https://orcid.org/0000-0002-5975-0805
+
+Jennifer Fleming:
+    affiliation: Protein Data Bank in Europe (PDBe) European Bioinformatics Institute (EMBL-EBI)
+    orcid: https://orcid.org/0000-0003-4016-8740
diff --git a/_data/events.yml b/_data/events.yml
@@ -8,6 +8,7 @@
 #  location: Cyberspace
 - name: BioMolecular Horizons
   startDate: 2024-09-22
+  endDate: 2024-09-22
   description: "Launch of the website at BioMolecular Horizons 2024"
   url: https://www.bmh2024.com/
 - name: Australian Structural Biology Computing community meeting

diff --git a/_data/news.yml b/_data/news.yml
@@ -1,6 +1,8 @@
-- name: "Script for Alphafold output validation metrics!"
-  date: 2024-11-01
-  description: "Python Script and info about configuring AF2 to output pTM, ipTM and MSA depth. Many thanks to the Australian Galaxy team (special shout out to Cam!) for making this happen (<https://github.com/usegalaxy-au/tools-au/tree/master/tools/alphafold#generating-additional-outputs>)"
-- name: "Script for updating Alphafold2 dependencies to stop 'template missing' failures (MMCIF patch)"
-  date: 2024-11-01
-  description: "MMCIF patch python script. Many thanks to the Australian Galaxy team (Cam again!) for making this happen (<https://github.com/usegalaxy-au/tools-au/tree/master/tools/alphafold/scripts/db/patch_mmcif>)"
+- name: "View the webinar series for protein design"
+  date: 2025-11-11
+  url: https://youtube.com/playlist?list=PL3KeWF8P6MjzKtxXLp83w78K_AGUskL0a&si=eMvuLoQzcg9sIws5
+  description: "A limited series webinar from 2025 that shared strategies to get the best outcomes from protein design projects. Speakers included: Richard Birkinshaw, Rhys Grinter, Josh Hardy, Joel Mackay, and Cyntia Taveneau."
+- name: "NCI Data Collection now available!"
+  date: 2026-02-23
+  url: https://dx.doi.org/10.25914/q48c-9a86
+  description: "This collection replicates key reference databases used for protein structure prediction and analysis. These resources enable NCI users to leverage deep learning models for molecular structure prediction. The datasets support AlphaFold3, AlphaFold2, Boltz, RoseTTaFold-All-Atom, ESMFold and HelixFold3 structure prediction tools."
diff --git a/_data/sidebars/main.yml b/_data/sidebars/main.yml
@@ -11,11 +11,11 @@ subitems:
     url: /contributors
   - title: Community library
     subitems:
-      - title: Community resources
+      - title: General resources
         url: /community_resources
       - title: How-to Guides
         url: /guides
-      - title: Community workflows
+      - title: Workflows
         url: /workflows
   - title: External resources
     subitems:

diff --git a/_data/tool_and_resource_list.yml b/_data/tool_and_resource_list.yml
@@ -312,7 +312,22 @@
   URL: https://cluster.foldseek.com/
 - Description: Reference data to support AI structural biology prediction models
   Tag: Community resource
-  Title: NCI  Structural Biology AI Reference Collection
+  Title: NCI Structural Biology AI Reference Collection
   Type:
   - Reference database
-  URL: https://dx.doi.org/10.25914/q48c-9a86
+  URL: https://dx.doi.org/10.25914/q48c-9a86
+  DOI: https://dx.doi.org/10.25914/q48c-9a86
+- Description: Online tutorial covering the principles of protein architecture and function
+  Tag: Community resource
+  Title: Foundations of protein structure tutorial
+  Type:
+  - Online tutorial
+  URL: https://www.ebi.ac.uk/training/online/courses/foundations-protein-structure/
+  DOI: https://doi.org/10.6019/tol.foundations-protein-structure-t.2026.00001.1
+- Description: A limited series of webinars from 2025 that shared strategies to get the best outcomes from protein design projects.
+  Tag: Community resource
+  Title: Protein design webinar series
+  Type:
+  - Webinar series
+  URL: protein_design_seminars
+  DOI: https://doi.org/10.5281/zenodo.17626498
diff --git a/_includes/events.html b/_includes/events.html
@@ -93,30 +93,7 @@ <h3 class="event-title">{{ event.name | escape }}</h3>
         .events-category:last-child {
             margin-bottom: 0;
         }
-
-        .category-title {
-            font-size: 1.3rem;
-            font-weight: 600;
-            color: #012152;
-            margin-bottom: 20px;
-            text-transform: uppercase;
-            letter-spacing: 0.1em;
-            position: relative;
-            padding-left: 20px;
-        }
-
-        .category-title::before {
-            content: '';
-            position: absolute;
-            left: 0;
-            top: 50%;
-            transform: translateY(-50%);
-            width: 4px;
-            height: 18px;
-            background: #012152;
-            border-radius: 2px;
-        }
-
+
         .events-list {
             display: grid;
             grid-template-columns: 1fr 1fr;

diff --git a/_includes/news.html b/_includes/news.html
@@ -0,0 +1,237 @@
+<div class="news">
+    <div class="news-container">
+        <div class="news-section">
+            {%- assign current_date = "now" | date: "%s" -%}
+            <div class="news-category">
+                {%- assign news = site.data.news | sort: "date" | reverse %}
+                {%- assign count = 0 -%}
+                <div class="news-list">
+                    {%- for item in news -%}
+                        <div class="news-item" onclick="redirectToNews('{{ item.url }}')">
+                            <div class="news-date-block">
+                                <div class="news-date">
+                                    <div class="news-day">{{ item.date | date: "%d" | escape }}</div>
+                                    <div class="news-month">{{ item.date | date: "%b" | escape }}</div>
+                                    <div class="news-year">{{ item.date | date: "%Y"  | escape }}</div>
+                                </div>
+                                <div class="news-content">
+                                    <h3 class="news-title">{{ item.name | escape }}</h3>
+                                    <p class="news-description">{{ item.description | markdownify }}</p>
+                                </div>
+                                <div class="news-arrow">→</div>
+                            </div>
+                        </div>
+                        {%- assign count = count | plus: 1 -%}
+                        {%- if include.limit and count == include.limit -%}
+                            {%- break -%}
+                        {%- endif -%}
+                    {%- endfor -%}
+                </div>
+            </div>
+        </div>
+    </div>
+
+    <style>
+        * {
+            margin: 0;
+            padding: 0;
+            box-sizing: border-box;
+        }
+
+        .news {
+            display: block;
+        };
+
+        .news-container {
+            max-width: 800px;
+            margin: 0 0;
+            padding: 3px 4px;
+        }
+
+        .news-section {
+            position: relative;
+        }
+
+        .news-header {
+            margin-bottom: 30px;
+            text-align: left;
+        }
+
+        .news-title {
+            font-size: clamp(2rem, 6vw, 3rem);
+            font-weight: 300;
+            letter-spacing: -0.01em;
+            margin-bottom: 5px;
+            color: #2d2d2d;
+        }
+
+        .news-subtitle {
+            font-size: 1rem;
+            color: #666;
+            font-weight: 400;
+        }
+
+        .news-category {
+            margin-bottom: 30px;
+        }
+
+        .news-category:last-child {
+            margin-bottom: 0;
+        }
+
+        .news-list {
+            display: grid;
+            grid-template-columns: 1fr 1fr;
+            gap: 30px;
+        }
+
+        .news-item {
+            border: 1px solid #e0e0e0;
+            border-radius: 12px;
+            padding: 20px;
+            transition: all 0.3s ease;
+            cursor: pointer;
+            background: #ffffff;
+        }
+
+        .news-item:hover {
+            background: #f8f8f8;
+            transform: translateY(-4px);
+            box-shadow: 0 8px 25px rgba(0,0,0,0.1);
+            border-color: #012152;
+        }
+
+        .news-date-block {
+            display: flex;
+            align-items: flex-start;
+            gap: 15px;
+            margin-bottom: 10px;
+        }
+
+        .news-date {
+            text-align: center;
+            background: #f8f8f8;
+            border-radius: 6px;
+            padding: 8px 6px;
+            width: 50px;
+            flex-shrink: 0;
+        }
+
+        .news-day {
+            font-size: 1.4rem;
+            font-weight: 700;
+            line-height: 1;
+            color: #012152;
+        }
+
+        .news-month {
+            font-size: 0.7rem;
+            text-transform: uppercase;
+            letter-spacing: 0.05em;
+            color: #666;
+            font-weight: 600;
+            margin-top: 1px;
+        }
+
+        .news-year {
+            font-size: 0.6rem;
+            color: #999;
+            font-weight: 400;
+        }
+
+        .past-news .news-item {
+            opacity: 0.7;
+        }
+
+        .past-news .news-day {
+            color: #999;
+        }
+
+        .news-content {
+            flex: 1;
+            position: relative;
+        }
+
+        .news-title {
+            font-size: 1.3rem;
+            font-weight: 600;
+            margin-bottom: 3px;
+            color: #2d2d2d;
+            line-height: 1.2;
+        }
+
+        .news-description {
+            color: #888;
+            font-size: 0.85rem;
+            line-height: 1.4;
+            display: -webkit-box;
+            -webkit-line-clamp: 3;
+            -webkit-box-orient: vertical;
+            overflow: hidden;
+        }
+
+        .news-arrow {
+            position: absolute;
+            top: 15px;
+            right: 15px;
+            width: 20px;
+            height: 20px;
+            opacity: 0;
+            transition: opacity 0.3s ease;
+            color: #012152;
+        }
+
+        .news-item:hover .news-arrow {
+            opacity: 1;
+        }
+
+        /* Responsive Design */
+        @media (max-width: 768px) {
+            .news-container {
+                padding: 30px 20px;
+            }
+
+            .news-list {
+                grid-template-columns: 1fr;
+                gap: 15px;
+            }
+
+            .news-date-block {
+                flex-direction: row;
+                align-items: flex-start;
+                gap: 12px;
+            }
+
+            .news-date {
+                text-align: center;
+                width: 45px;
+                flex-shrink: 0;
+            }
+        }
+
+        /* Smooth scroll behavior */
+        html {
+            scroll-behavior: smooth;
+        }
+
+        /* Custom scrollbar */
+        ::-webkit-scrollbar {
+            width: 8px;
+        }
+
+        ::-webkit-scrollbar-track {
+            background: #f1f1f1;
+        }
+
+        ::-webkit-scrollbar-thumb {
+            background: #012152;
+            border-radius: 4px;
+        }
+    </style>
+
+    <script>
+        function redirectToNews(news_url) {
+            window.open(`${news_url}`, '_blank');
+        }
+    </script>
+</div>