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Add alphafold2_params_prefix
1 parent 4d20279 commit f7340fc

1 file changed

Lines changed: 5 additions & 4 deletions

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conf/dbs.config

Lines changed: 5 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -9,6 +9,10 @@
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params {
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// Dated prefixes, can be modified for alternate versions
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alphafold2_params_prefix = "alphafold_params_2022-12-06"
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uniref30_prefix = "UniRef30_2023_02"
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// AlphaFold2 links
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bfd_link = 'https://storage.googleapis.com/alphafold-databases/casp14_versions/bfd_metaclust_clu_complete_id30_c90_final_seq.sorted_opt.tar.gz'
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alphafold2_small_bfd_link = 'https://storage.googleapis.com/alphafold-databases/reduced_dbs/bfd-first_non_consensus_sequences.fasta.gz'
@@ -26,7 +30,7 @@ params {
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// Alphafold2 paths
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bfd_path = "${params.alphafold2_db}/bfd/*"
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alphafold2_small_bfd_path = "${params.alphafold2_db}/small_bfd/*"
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alphafold2_params_path = "${params.alphafold2_db}/params/alphafold_params_*/*"
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alphafold2_params_path = "${params.alphafold2_db}/params/${params.alphafold2_params_prefix}/*"
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alphafold2_mgnify_path = "${params.alphafold2_db}/mgnify/*"
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pdb70_path = "${params.alphafold2_db}/pdb70/*"
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alphafold2_pdb_mmcif_path = "${params.alphafold2_db}/pdb_mmcif/mmcif_files"
@@ -53,9 +57,6 @@ params {
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alphafold3_pdb_seqres_path = "${params.alphafold3_db}/pdb_seqres/*"
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alphafold3_uniprot_path = "${params.alphafold3_db}/uniprot/*"
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// Dated prefix for UniRef30 (e.g. UniRef30_2023_02)
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uniref30_prefix = "UniRef30_2023_02"
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// Boltz links
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boltz_ccd_link = 'https://huggingface.co/boltz-community/boltz-1/resolve/main/ccd.pkl'
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boltz_model_link = 'https://huggingface.co/boltz-community/boltz-1/resolve/main/boltz1_conf.ckpt'

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