Remove solved allowlist entries post merge

Author: Avasam

pyproject.toml

@@ -165,6 +165,13 @@ disable_error_code = [
     "assignment", # 744 errors in 155 files
 ]
 
+[[tool.mypy.overrides]]
+# follow_untyped_imports = true will cause stubtest to run mypy on the source
+# So disable it for partial stubs
+module = ["sympy.*"]
+follow_untyped_imports = false
+disable_error_code = ["import-untyped", "misc"]
+
 [[tool.mypy.overrides]]
 # These modules are to be removed soon, not worth solving many issues
 module = ["matplotlib.*", "networkx.*"]
@@ -173,7 +180,7 @@ disable_error_code = [
     "misc",
 ]
 [[tool.mypy.overrides]]
-module = ["sympy.*", "skimage.*", "sklearn.*"]
+module = ["skimage.*", "sklearn.*"]
 # TODO: Too many untyped decorators still left
 # https://github.com/python/mypy/issues/19148
 disable_error_code = ["misc"]

stubs/skimage/stubtest_allowlist.txt

@@ -41,29 +41,8 @@ skimage.data
 skimage.data.binary_blobs
 skimage.data.cat
 skimage.data.data_dir
-skimage.data.hubble_deep_field
-skimage.data.human_mitosis
-skimage.data.immunohistochemistry
-skimage.data.kidney
-skimage.data.lbp_frontal_face_cascade_filename
-skimage.data.lfw_subset
-skimage.data.lily
-skimage.data.logo
-skimage.data.microaneurysms
-skimage.data.moon
-skimage.data.nickel_solidification
-skimage.data.page
-skimage.data.palisades_of_vogt
-skimage.data.protein_transport
-skimage.data.retina
-skimage.data.rocket
-skimage.data.shepp_logan_phantom
-skimage.data.skin
-skimage.data.stereo_motorcycle
 skimage.data.tests
 skimage.data.tests.test_data
-skimage.data.text
-skimage.data.vortex
 skimage.draw
 skimage.draw.__all__
 skimage.draw._bezier_segment
@@ -328,7 +307,6 @@ skimage.__lazy_dir__
 skimage._shared._dependency_checks.has_mpl
 skimage._shared._warnings.warn
 skimage._shared.lazy
-skimage._shared.setup
 skimage._shared.testing.SKIP_RE
 skimage._shared.testing.arch32
 skimage._shared.testing.fixture
@@ -346,7 +324,6 @@ skimage._shared.utils.warn
 skimage._shared.version_requirements.ensure_python_version
 skimage._typing
 skimage.data.__all__
-skimage.data.__dir__
 skimage.data._binary_blobs.binary_blobs
 skimage.data._fetchers.cat
 skimage.data._fetchers.create_image_fetcher
@@ -356,7 +333,6 @@ skimage.data._fetchers.legacy_data_dir
 skimage.data._fetchers.skimage_distribution_dir
 skimage.draw._random_shapes.SHAPE_CHOICES
 skimage.draw._random_shapes.SHAPE_GENERATORS
-skimage.draw.setup
 skimage.ensure_python_version
 skimage.feature.BRIEF.__init__
 skimage.feature.Cascade.detect_multi_scale
@@ -388,8 +364,6 @@ skimage.future.graph._ncut
 skimage.future.graph.graph_cut
 skimage.future.graph.graph_merge
 skimage.future.graph.rag
-skimage.future.graph.setup
-skimage.future.setup
 skimage.measure._find_contours._param_options
 skimage.measure._marching_cubes_classic
 skimage.measure._marching_cubes_lewiner.EDGETORELATIVEPOSX
@@ -472,7 +446,6 @@ skimage.measure.pnpoly.grid_points_in_poly
 skimage.measure.ransac
 skimage.measure.regionprops
 skimage.measure.regionprops_table
-skimage.measure.setup
 skimage.morphology._skeletonize.G123P_LUT
 skimage.morphology._skeletonize.G123_LUT
 skimage.morphology._skeletonize._eight_connect
@@ -503,12 +476,10 @@ skimage.morphology.misc.funcs
 skimage.morphology.octagon
 skimage.morphology.octahedron
 skimage.morphology.selem
-skimage.morphology.setup
 skimage.morphology.skeletonize_3d
 skimage.morphology.square
 skimage.scripts
 skimage.scripts.skivi
-skimage.setup
 skimage.submodules
 skimage.test
 skimage.transform.AffineTransform
@@ -547,5 +518,4 @@ skimage.transform.hough_transform.hough_circle_peaks
 skimage.transform.hough_transform.hough_line_peaks
 skimage.transform.hough_transform.probabilistic_hough_line
 skimage.transform.probabilistic_hough_line
-skimage.transform.setup
 skimage.transform.warp

stubs/sklearn/stubtest_allowlist.txt

@@ -70,6 +70,15 @@ class RequestMethod:
     def __get__(self, instance, owner): ...
 
 class _MetadataRequester:
+    def __init_subclass__(cls, **kwargs): ...
+    def get_metadata_routing(self): ...
+    # This code is never run in runtime, but it's here for type checking.
+    # Type checkers fail to understand that the `set_{method}_request`
+    # methods are dynamically generated, and they complain that they are
+    # not defined. We define them here to make type checkers happy.
+    # During type checking analyzers assume this to be True.
+    # The following list of defined methods mirrors the list of methods
+    # in SIMPLE_METHODS.
     def set_fit_request(self, **kwargs): ...
     def set_partial_fit_request(self, **kwargs): ...
     def set_predict_request(self, **kwargs): ...
@@ -80,7 +89,5 @@ class _MetadataRequester:
     def set_split_request(self, **kwargs): ...
     def set_transform_request(self, **kwargs): ...
     def set_inverse_transform_request(self, **kwargs): ...
-    def __init_subclass__(cls, **kwargs): ...
-    def get_metadata_routing(self): ...
 
 def process_routing(_obj, _method, /, **kwargs): ...

stubs/sklearn/utils/_metadata_requests.pyi

@@ -58,6 +58,10 @@ class Function(Application, Expr):
     def as_base_exp(self) -> tuple[Self, Any]: ...
     def fdiff(self, argindex=...) -> ArrayDerivative | Derivative | Subs: ...
 
+class DefinedFunction(Function):
+    @cacheit
+    def __new__(cls, *args, **options) -> Expr: ...
+
 class AppliedUndef(Function):
     is_number = ...
     def __new__(cls, *args, **options) -> type[UndefinedFunction]: ...