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Expand file tree Collapse file tree Original file line number Diff line number Diff line change 1414# limitations under the License.
1515#
1616#!/usr/bin/env python2.7
17- """
18- @author Frank Austin Nothaft fnothaft@berkeley.edu
19- @date 12/30/2015
2017
18+ """
2119Pipeline to go from FASTQ to VCF using both the ADAM+HaplotypeCaller pipeline
2220as well as the GATK best practices pipeline.
2321
Original file line number Diff line number Diff line change 1414# limitations under the License.
1515#
1616#!/usr/bin/env python2.7
17+
1718"""
1819UCSC Computational Genomics Lab ADAM/Spark pipeline
1920
20- @author Audrey Musselman-Brown, almussel@ucsc.edu
21- @author Frank Austin Nothaft, fnothaft@berkeley.edu
22-
2321Please see the README.md in the same directory
2422
2523Toil pipeline for ADAM preprocessing
Original file line number Diff line number Diff line change 1414# limitations under the License.
1515#
1616#!/usr/bin/env python2.7
17- """
18- @author Jacob Pfeil
19- @data 01/13/2016
2017
18+ """
2119Toil pipeline for processing bam files for GATK halpotype calling
2220
23211 = download shared data
Original file line number Diff line number Diff line change 1313# See the License for the specific language governing permissions and
1414# limitations under the License.
1515#
16+
1617"""
1718Spawns a Spark cluster backed by HDFS.
18-
19- @author Audrey Musselman-Brown, almussel@ucsc.edu
20- @author Frank Austin Nothaft, fnothaft@berkeley.edu
2119"""
2220
2321import logging
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