Add documentation

Author: EZoni

.gitignore

@@ -6,3 +6,6 @@ experiments/*/
 
 # JetBrains IDE idea directories
 .idea/
+
+# Documentation
+docs/build/**

docs/Makefile

@@ -0,0 +1,20 @@
+# Minimal makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line, and also
+# from the environment for the first two.
+SPHINXOPTS    ?=
+SPHINXBUILD   ?= sphinx-build
+SOURCEDIR     = source
+BUILDDIR      = build
+
+# Put it first so that "make" without argument is like "make help".
+help:
+	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+
+.PHONY: help Makefile
+
+# Catch-all target: route all unknown targets to Sphinx using the new
+# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
+%: Makefile
+	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)

docs/docs.yml

@@ -0,0 +1,10 @@
+name: synapse-docs
+
+channels:
+  - conda-forge
+  - nodefaults
+
+dependencies:
+  - myst-parser
+  - sphinx
+  - sphinx-book-theme

docs/make.bat

@@ -0,0 +1,35 @@
+@ECHO OFF
+
+pushd %~dp0
+
+REM Command file for Sphinx documentation
+
+if "%SPHINXBUILD%" == "" (
+	set SPHINXBUILD=sphinx-build
+)
+set SOURCEDIR=source
+set BUILDDIR=build
+
+%SPHINXBUILD% >NUL 2>NUL
+if errorlevel 9009 (
+	echo.
+	echo.The 'sphinx-build' command was not found. Make sure you have Sphinx
+	echo.installed, then set the SPHINXBUILD environment variable to point
+	echo.to the full path of the 'sphinx-build' executable. Alternatively you
+	echo.may add the Sphinx directory to PATH.
+	echo.
+	echo.If you don't have Sphinx installed, grab it from
+	echo.https://www.sphinx-doc.org/
+	exit /b 1
+)
+
+if "%1" == "" goto help
+
+%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
+goto end
+
+:help
+%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
+
+:end
+popd

docs/source/conf.py

@@ -0,0 +1,25 @@
+# Configuration file for the Sphinx documentation builder.
+#
+# For the full list of built-in configuration values, see the documentation:
+# https://www.sphinx-doc.org/en/master/usage/configuration.html
+
+# -- Project information -----------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information
+
+project = 'Synapse'
+copyright = 'BSD-3-Clause-LBNL'
+author = 'Arjun Dhamrait, Andrea Diaz, Marco Garten, Axel Huebl, Revathi Jambunathan, Remi Lehe, Ethan Rodriguez, Olga Shapoval, Edoardo Zoni'
+
+# -- General configuration ---------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration
+
+extensions = ['myst_parser']
+
+templates_path = ['_templates']
+exclude_patterns = []
+
+# -- Options for HTML output -------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output
+
+html_theme = 'sphinx_book_theme'
+html_static_path = ['_static']

docs/source/experiments.md

@@ -0,0 +1,3 @@
+# Experiments
+
+Coming soon.

docs/source/index.rst

@@ -0,0 +1,14 @@
+Synapse
+=======
+
+Welcome to the Synapse documentation!
+
+.. toctree::
+   :hidden:
+   :maxdepth: 2
+   :caption: Contents:
+
+   overview
+   experiments
+   simulations
+   models

docs/source/models.md

@@ -0,0 +1,3 @@
+# ML Models
+
+Coming soon.

docs/source/overview.md

@@ -0,0 +1,3 @@
+# Overview
+
+Coming soon.

docs/source/simulations.md

@@ -0,0 +1,3 @@
+# Simulations
+
+Coming soon.