Hi,
I installed plasmidID using bioconda in a separate conda environment and I tried to run it using the below command in which I supplied file names with their directory path. Kindly advise
plasmidID \ -1 SAMPLE_R1.fastq.gz \ -2 SAMPLE_R2.fastq.gz \ -d YYYY-MM-DD_plasmids.fasta \ -c SAMPLE_assembled_contigs.fasta \ --no-trim \ -s SAMPLE
All dependencies are installed, however, I get this error
line 487: syntax error near unexpected token >'`
I am attaching the log file
plasmidID.log
Hi,
I installed plasmidID using bioconda in a separate conda environment and I tried to run it using the below command in which I supplied file names with their directory path. Kindly advise
plasmidID \ -1 SAMPLE_R1.fastq.gz \ -2 SAMPLE_R2.fastq.gz \ -d YYYY-MM-DD_plasmids.fasta \ -c SAMPLE_assembled_contigs.fasta \ --no-trim \ -s SAMPLEAll dependencies are installed, however, I get this error
line 487: syntax error near unexpected token>'`I am attaching the log file
plasmidID.log