Upload pipeline-manager samples to iSkyLIMS#882
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saramonzon
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May 6, 2026
| platforms.append(configured_platform) | ||
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| platforms = list(dict.fromkeys(platforms)) | ||
| if "relecov" in platforms: |
| return platforms | ||
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| @staticmethod | ||
| def _get_platform_display_name(platform: str) -> str: |
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this maybe could be in the config?
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PR Description
pipeline-managersample metadata to both relecov-platform and iSkyLIMS.unique_sample_idis available before the iSkyLIMS upload.unique_sample_idas the iSkyLIMSsample_namefallback to avoid creating duplicate samples with local sequencing IDs.--skip_db_uploadskip the database upload step as expected.PR Checklist
black and flake8).CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).