Skip to content

two questions when using cell2location #438

@yuu342

Description

@yuu342

Hello,I have two questions.Because my dataset is too large,I am not sure of the N_cells_per_location.Could you please give me some advice?And can I reduce the batch_size like this to avoid the memory problem?I expect your reply.
mod.train(max_epochs=30000,
# train using full data (batch_size=None)
batch_size=256,
# use all data points in training because
# we need to estimate cell abundance at all locations
train_size=1
)

Metadata

Metadata

Assignees

No one assigned

    Labels

    questionFurther information is requested

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions