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slopez-bslopez-b
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fix sensorgram type
1 parent 9cd8235 commit 3891373

2 files changed

Lines changed: 33 additions & 34 deletions

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‎src/allotropy/parsers/cytiva_biacore_insight/cytiva_biacore_insight_structure.py‎

Lines changed: 1 addition & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -363,8 +363,7 @@ def create(
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),
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),
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"Included": run_info.get(str, "Included"),
366-
# TODO: replace with flow_cell_info an test!
367-
"Sensorgram type": first_row_data.get(
366+
"Sensorgram type": flow_cell_info.get(
368367
str, "Sensorgram type", run_info.get(str, "Sensorgram type")
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),
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"Level": quantity_or_none(

‎tests/parsers/cytiva_biacore_insight/testdata/Cytiva_Biacore_Insight_Example01.json‎

Lines changed: 32 additions & 32 deletions
Original file line numberDiff line numberDiff line change
@@ -73,7 +73,7 @@
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"unit": "µL/min"
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},
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"Included": "Yes",
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"Sensorgram type": "Reference",
76+
"Sensorgram type": "Active",
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"Level": {
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"value": 9.0,
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"unit": "RU"
@@ -108,7 +108,7 @@
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"value": 30.0,
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"unit": "µL/min"
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},
111-
"Sensorgram type": "Reference"
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"Sensorgram type": "Reference subtracted"
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}
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}
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]
@@ -987,7 +987,7 @@
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"unit": "µL/min"
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},
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"Included": "Yes",
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"Sensorgram type": "Reference",
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"Sensorgram type": "Active",
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"Level": {
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"value": 10.0,
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"unit": "RU"
@@ -1022,7 +1022,7 @@
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"value": 30.0,
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"unit": "µL/min"
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},
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"Sensorgram type": "Reference"
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"Sensorgram type": "Reference subtracted"
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}
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}
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]
@@ -1901,7 +1901,7 @@
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"unit": "µL/min"
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},
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"Included": "Yes",
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"Sensorgram type": "Reference",
1904+
"Sensorgram type": "Active",
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"Level": {
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"value": 11.0,
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"unit": "RU"
@@ -1936,7 +1936,7 @@
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"value": 30.0,
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"unit": "µL/min"
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},
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"Sensorgram type": "Reference"
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"Sensorgram type": "Reference subtracted"
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}
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}
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]
@@ -2815,7 +2815,7 @@
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"unit": "µL/min"
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},
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"Included": "Yes",
2818-
"Sensorgram type": "Reference",
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"Sensorgram type": "Active",
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"Level": {
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"value": 12.0,
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"unit": "RU"
@@ -2850,7 +2850,7 @@
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"value": 30.0,
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"unit": "µL/min"
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},
2853-
"Sensorgram type": "Reference"
2853+
"Sensorgram type": "Reference subtracted"
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}
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}
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]
@@ -3729,7 +3729,7 @@
37293729
"unit": "µL/min"
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},
37313731
"Included": "Yes",
3732-
"Sensorgram type": "Reference",
3732+
"Sensorgram type": "Active",
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"Level": {
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"value": 13.0,
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"unit": "RU"
@@ -3764,7 +3764,7 @@
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"value": 30.0,
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"unit": "µL/min"
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},
3767-
"Sensorgram type": "Reference"
3767+
"Sensorgram type": "Reference subtracted"
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}
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}
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]
@@ -4643,7 +4643,7 @@
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"unit": "µL/min"
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},
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"Included": "Yes",
4646-
"Sensorgram type": "Reference",
4646+
"Sensorgram type": "Active",
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"Level": {
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"value": 14.0,
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"unit": "RU"
@@ -4678,7 +4678,7 @@
46784678
"value": 30.0,
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"unit": "µL/min"
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},
4681-
"Sensorgram type": "Reference"
4681+
"Sensorgram type": "Reference subtracted"
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}
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}
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]
@@ -5557,7 +5557,7 @@
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"unit": "µL/min"
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},
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"Included": "Yes",
5560-
"Sensorgram type": "Reference",
5560+
"Sensorgram type": "Active",
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"Level": {
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"value": 15.0,
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"unit": "RU"
@@ -5592,7 +5592,7 @@
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"value": 30.0,
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"unit": "µL/min"
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},
5595-
"Sensorgram type": "Reference"
5595+
"Sensorgram type": "Reference subtracted"
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}
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}
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]
@@ -6471,7 +6471,7 @@
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"unit": "µL/min"
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},
64736473
"Included": "Yes",
6474-
"Sensorgram type": "Reference",
6474+
"Sensorgram type": "Active",
64756475
"Level": {
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"value": 16.0,
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"unit": "RU"
@@ -6506,7 +6506,7 @@
65066506
"value": 30.0,
65076507
"unit": "µL/min"
65086508
},
6509-
"Sensorgram type": "Reference"
6509+
"Sensorgram type": "Reference subtracted"
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}
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}
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]
@@ -7410,7 +7410,7 @@
74107410
"unit": "µL/min"
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},
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"Included": "Yes",
7413-
"Sensorgram type": "Reference",
7413+
"Sensorgram type": "Active",
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"Level": {
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"value": 9.0,
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"unit": "RU"
@@ -7445,7 +7445,7 @@
74457445
"value": 30.0,
74467446
"unit": "µL/min"
74477447
},
7448-
"Sensorgram type": "Reference"
7448+
"Sensorgram type": "Reference subtracted"
74497449
}
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}
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]
@@ -8359,7 +8359,7 @@
83598359
"unit": "µL/min"
83608360
},
83618361
"Included": "Yes",
8362-
"Sensorgram type": "Reference",
8362+
"Sensorgram type": "Active",
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"Level": {
83648364
"value": 10.0,
83658365
"unit": "RU"
@@ -8394,7 +8394,7 @@
83948394
"value": 30.0,
83958395
"unit": "µL/min"
83968396
},
8397-
"Sensorgram type": "Reference"
8397+
"Sensorgram type": "Reference subtracted"
83988398
}
83998399
}
84008400
]
@@ -9308,7 +9308,7 @@
93089308
"unit": "µL/min"
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},
93109310
"Included": "Yes",
9311-
"Sensorgram type": "Reference",
9311+
"Sensorgram type": "Active",
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"Level": {
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"value": 11.0,
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"unit": "RU"
@@ -9343,7 +9343,7 @@
93439343
"value": 30.0,
93449344
"unit": "µL/min"
93459345
},
9346-
"Sensorgram type": "Reference"
9346+
"Sensorgram type": "Reference subtracted"
93479347
}
93489348
}
93499349
]
@@ -10257,7 +10257,7 @@
1025710257
"unit": "µL/min"
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},
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"Included": "Yes",
10260-
"Sensorgram type": "Reference",
10260+
"Sensorgram type": "Active",
1026110261
"Level": {
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"value": 12.0,
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"unit": "RU"
@@ -10292,7 +10292,7 @@
1029210292
"value": 30.0,
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"unit": "µL/min"
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},
10295-
"Sensorgram type": "Reference"
10295+
"Sensorgram type": "Reference subtracted"
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}
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}
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]
@@ -11206,7 +11206,7 @@
1120611206
"unit": "µL/min"
1120711207
},
1120811208
"Included": "Yes",
11209-
"Sensorgram type": "Reference",
11209+
"Sensorgram type": "Active",
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"Level": {
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"value": 13.0,
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"unit": "RU"
@@ -11241,7 +11241,7 @@
1124111241
"value": 30.0,
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"unit": "µL/min"
1124311243
},
11244-
"Sensorgram type": "Reference"
11244+
"Sensorgram type": "Reference subtracted"
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}
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}
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]
@@ -12155,7 +12155,7 @@
1215512155
"unit": "µL/min"
1215612156
},
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"Included": "Yes",
12158-
"Sensorgram type": "Reference",
12158+
"Sensorgram type": "Active",
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"Level": {
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"value": 14.0,
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"unit": "RU"
@@ -12190,7 +12190,7 @@
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"value": 30.0,
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"unit": "µL/min"
1219212192
},
12193-
"Sensorgram type": "Reference"
12193+
"Sensorgram type": "Reference subtracted"
1219412194
}
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}
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]
@@ -13078,7 +13078,7 @@
1307813078
"unit": "µL/min"
1307913079
},
1308013080
"Included": "Yes",
13081-
"Sensorgram type": "Reference",
13081+
"Sensorgram type": "Active",
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"Level": {
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"value": 15.0,
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"unit": "RU"
@@ -13113,7 +13113,7 @@
1311313113
"value": 30.0,
1311413114
"unit": "µL/min"
1311513115
},
13116-
"Sensorgram type": "Reference"
13116+
"Sensorgram type": "Reference subtracted"
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}
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}
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]
@@ -14027,7 +14027,7 @@
1402714027
"unit": "µL/min"
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},
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"Included": "Yes",
14030-
"Sensorgram type": "Reference",
14030+
"Sensorgram type": "Active",
1403114031
"Level": {
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"value": 16.0,
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"unit": "RU"
@@ -14062,7 +14062,7 @@
1406214062
"value": 30.0,
1406314063
"unit": "µL/min"
1406414064
},
14065-
"Sensorgram type": "Reference"
14065+
"Sensorgram type": "Reference subtracted"
1406614066
}
1406714067
}
1406814068
]

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