qiacuity dpcr - Added unread data

felipenarv · felipenarv · commit 849dc395c445 · 2025-10-10T11:41:24.000-05:00
diff --git a/src/allotropy/parsers/qiacuity_dpcr/qiacuity_dpcr_structure.py b/src/allotropy/parsers/qiacuity_dpcr/qiacuity_dpcr_structure.py
@@ -42,6 +42,7 @@ def create_measurements(data: SeriesData) -> Measurement:
         positive_partition_count=data[int, "Partitions (positive)"],
         negative_partition_count=data.get(int, "Partitions (negative)"),
         fluorescence_intensity_threshold_setting=data.get(float, "Threshold"),
+        custom_info=data.get_unread(),
     )
 
 
diff --git a/tests/parsers/qiacuity_dpcr/testdata/qiacuity_dpcr_example01.json b/tests/parsers/qiacuity_dpcr/testdata/qiacuity_dpcr_example01.json
@@ -59,6 +59,12 @@
                                         }
                                     }
                                 ]
+                            },
+                            "custom information document": {
+                                "Reaction Mix": "5p",
+                                "IC": "-",
+                                "Control type": "-",
+                                "CI (95%)": 4.6
                             }
                         },
                         {
@@ -106,6 +112,12 @@
                                         }
                                     }
                                 ]
+                            },
+                            "custom information document": {
+                                "Reaction Mix": "5p",
+                                "IC": "-",
+                                "Control type": "-",
+                                "CI (95%)": 15.2
                             }
                         },
                         {
@@ -153,6 +165,12 @@
                                         }
                                     }
                                 ]
+                            },
+                            "custom information document": {
+                                "Reaction Mix": "5p",
+                                "IC": "-",
+                                "Control type": "-",
+                                "CI (95%)": 10.3
                             }
                         },
                         {
@@ -200,6 +218,12 @@
                                         }
                                     }
                                 ]
+                            },
+                            "custom information document": {
+                                "Reaction Mix": "5p",
+                                "IC": "-",
+                                "Control type": "-",
+                                "CI (95%)": 4.2
                             }
                         },
                         {
@@ -247,6 +271,12 @@
                                         }
                                     }
                                 ]
+                            },
+                            "custom information document": {
+                                "Reaction Mix": "5p",
+                                "IC": "-",
+                                "Control type": "-",
+                                "CI (95%)": 3.3
                             }
                         },
                         {
@@ -294,6 +324,12 @@
                                         }
                                     }
                                 ]
+                            },
+                            "custom information document": {
+                                "Reaction Mix": "5p",
+                                "IC": "-",
+                                "Control type": "-",
+                                "CI (95%)": 6.6
                             }
                         }
                     ]
@@ -305,7 +341,7 @@
             "UNC path": "tests/parsers/qiacuity_dpcr/testdata/qiacuity_dpcr_example01.csv",
             "software name": "Qiacuity Software Suite",
             "ASM converter name": "allotropy_qiacuity_dpcr",
-            "ASM converter version": "0.1.92"
+            "ASM converter version": "0.1.106"
         }
     }
 }
diff --git a/tests/parsers/qiacuity_dpcr/testdata/qiacuity_dpcr_example02.json b/tests/parsers/qiacuity_dpcr/testdata/qiacuity_dpcr_example02.json
@@ -59,6 +59,12 @@
                                         }
                                     }
                                 ]
+                            },
+                            "custom information document": {
+                                "IC": "-",
+                                "Control type": "-",
+                                "Reaction Mix": "5p",
+                                "CI (95%)": 4.6
                             }
                         },
                         {
@@ -106,6 +112,12 @@
                                         }
                                     }
                                 ]
+                            },
+                            "custom information document": {
+                                "IC": "-",
+                                "Control type": "-",
+                                "Reaction Mix": "5p",
+                                "CI (95%)": 15.2
                             }
                         },
                         {
@@ -153,6 +165,12 @@
                                         }
                                     }
                                 ]
+                            },
+                            "custom information document": {
+                                "IC": "-",
+                                "Control type": "-",
+                                "Reaction Mix": "5p",
+                                "CI (95%)": 10.3
                             }
                         },
                         {
@@ -200,6 +218,12 @@
                                         }
                                     }
                                 ]
+                            },
+                            "custom information document": {
+                                "IC": "-",
+                                "Control type": "-",
+                                "Reaction Mix": "5p",
+                                "CI (95%)": 4.2
                             }
                         },
                         {
@@ -247,6 +271,12 @@
                                         }
                                     }
                                 ]
+                            },
+                            "custom information document": {
+                                "IC": "-",
+                                "Control type": "-",
+                                "Reaction Mix": "5p",
+                                "CI (95%)": 3.3
                             }
                         },
                         {
@@ -294,6 +324,12 @@
                                         }
                                     }
                                 ]
+                            },
+                            "custom information document": {
+                                "IC": "-",
+                                "Control type": "-",
+                                "Reaction Mix": "5p",
+                                "CI (95%)": 6.6
                             }
                         }
                     ]
@@ -305,7 +341,7 @@
             "UNC path": "tests/parsers/qiacuity_dpcr/testdata/qiacuity_dpcr_example02.csv",
             "software name": "Qiacuity Software Suite",
             "ASM converter name": "allotropy_qiacuity_dpcr",
-            "ASM converter version": "0.1.61"
+            "ASM converter version": "0.1.106"
         }
     }
 }
diff --git a/tests/parsers/qiacuity_dpcr/testdata/qiacuity_dpcr_example03.json b/tests/parsers/qiacuity_dpcr/testdata/qiacuity_dpcr_example03.json

Original file line number	Diff line number	Diff line change
`@@ -42,6 +42,7 @@ def create_measurements(data: SeriesData) -> Measurement:`
`42`	`42`	`positive_partition_count=data[int, "Partitions (positive)"],`
`43`	`43`	`negative_partition_count=data.get(int, "Partitions (negative)"),`
`44`	`44`	`fluorescence_intensity_threshold_setting=data.get(float, "Threshold"),`
	`45`	`+ custom_info=data.get_unread(),`
`45`	`46`	`)`
`46`	`47`
`47`	`48`
Original file line number	Diff line number	Diff line change
`@@ -59,6 +59,12 @@`
`59`	`59`	`}`
`60`	`60`	`}`
`61`	`61`	`]`
	`62`	`+ },`
	`63`	`+ "custom information document": {`
	`64`	`+ "Reaction Mix": "5p",`
	`65`	`+ "IC": "-",`
	`66`	`+ "Control type": "-",`
	`67`	`+ "CI (95%)": 4.6`
`62`	`68`	`}`
`63`	`69`	`},`
`64`	`70`	`{`
`@@ -106,6 +112,12 @@`
`106`	`112`	`}`
`107`	`113`	`}`
`108`	`114`	`]`
	`115`	`+ },`
	`116`	`+ "custom information document": {`
	`117`	`+ "Reaction Mix": "5p",`
	`118`	`+ "IC": "-",`
	`119`	`+ "Control type": "-",`
	`120`	`+ "CI (95%)": 15.2`
`109`	`121`	`}`
`110`	`122`	`},`
`111`	`123`	`{`
`@@ -153,6 +165,12 @@`
`153`	`165`	`}`
`154`	`166`	`}`
`155`	`167`	`]`
	`168`	`+ },`
	`169`	`+ "custom information document": {`
	`170`	`+ "Reaction Mix": "5p",`
	`171`	`+ "IC": "-",`
	`172`	`+ "Control type": "-",`
	`173`	`+ "CI (95%)": 10.3`
`156`	`174`	`}`
`157`	`175`	`},`
`158`	`176`	`{`
`@@ -200,6 +218,12 @@`
`200`	`218`	`}`
`201`	`219`	`}`
`202`	`220`	`]`
	`221`	`+ },`
	`222`	`+ "custom information document": {`
	`223`	`+ "Reaction Mix": "5p",`
	`224`	`+ "IC": "-",`
	`225`	`+ "Control type": "-",`
	`226`	`+ "CI (95%)": 4.2`
`203`	`227`	`}`
`204`	`228`	`},`
`205`	`229`	`{`
`@@ -247,6 +271,12 @@`
`247`	`271`	`}`
`248`	`272`	`}`
`249`	`273`	`]`
	`274`	`+ },`
	`275`	`+ "custom information document": {`
	`276`	`+ "Reaction Mix": "5p",`
	`277`	`+ "IC": "-",`
	`278`	`+ "Control type": "-",`
	`279`	`+ "CI (95%)": 3.3`
`250`	`280`	`}`
`251`	`281`	`},`
`252`	`282`	`{`
`@@ -294,6 +324,12 @@`
`294`	`324`	`}`
`295`	`325`	`}`
`296`	`326`	`]`
	`327`	`+ },`
	`328`	`+ "custom information document": {`
	`329`	`+ "Reaction Mix": "5p",`
	`330`	`+ "IC": "-",`
	`331`	`+ "Control type": "-",`
	`332`	`+ "CI (95%)": 6.6`
`297`	`333`	`}`
`298`	`334`	`}`
`299`	`335`	`]`
`@@ -305,7 +341,7 @@`
`305`	`341`	`"UNC path": "tests/parsers/qiacuity_dpcr/testdata/qiacuity_dpcr_example01.csv",`
`306`	`342`	`"software name": "Qiacuity Software Suite",`
`307`	`343`	`"ASM converter name": "allotropy_qiacuity_dpcr",`
`308`		`- "ASM converter version": "0.1.92"`
	`344`	`+ "ASM converter version": "0.1.106"`
`309`	`345`	`}`
`310`	`346`	`}`
`311`	`347`	`}`