remove plate reader custom information

Author: oscar-castro-bl

src/allotropy/parsers/revvity_kaleido/kaleido_structure.py

@@ -266,6 +266,10 @@ def create(
             custom_info=data.get_unread(),
         )
 
+    def clean_custom_info(self) -> None:
+        self.custom_info.clear()
+
+
 
 @dataclass(frozen=True)
 class Platemap:
@@ -625,6 +629,11 @@ def _create_measurements(
 
 
 def create_measurement_groups(data: Data) -> list[MeasurementGroup]:
+    protocol_owner = data.measurement_info.custom_info.get("protocol owner", None)
+    measurement_finished = data.measurement_info.custom_info.get("measurement finished", None)
+    protocol_name = data.measurement_info.custom_info.get("protocol name", None)
+    data.measurement_info.clean_custom_info()
+
     return [
         MeasurementGroup(
             measurement_time=data.measurement_info.measurement_time,
@@ -656,15 +665,9 @@ def create_measurement_groups(data: Data) -> list[MeasurementGroup]:
             if data.background_info.experiment_type is ExperimentType.OPTICAL_IMAGING
             else None,
             custom_info={
-                "protocol owner": data.measurement_info.custom_info.get(
-                    "protocol owner", None
-                ),
-                "measurement finished": data.measurement_info.custom_info.get(
-                    "measurement finished", None
-                ),
-                "protocol name": data.measurement_info.custom_info.get(
-                    "protocol name", None
-                ),
+                "protocol owner": protocol_owner,
+                "measurement finished": measurement_finished,
+                "protocol name": protocol_name,
             },
         )
         for well_position, well_value in data.iter_wells()

tests/parsers/revvity_kaleido/testdata/absorbance/absorbance_endpoint_single_plate_example_01.json

@@ -5679,16 +5679,7 @@
             "software name": "Kaleido",
             "software version": "2.0.3058.126",
             "ASM converter name": "allotropy_revvity_kaleido",
-            "ASM converter version": "0.1.104"
-        },
-        "custom information document": {
-            "measurement finished": "2020-10-26T16:17:14.6440969-04:00",
-            "protocol owner": "foo",
-            "software version": "Kaleido 2.0.3058.126",
-            "number of plate repeats": 1.0,
-            "barcode": "V-2020-10-26 16:16:17",
-            "start plate repeat each [s]": 0.0,
-            "protocol name": "bar"
+            "ASM converter version": "0.1.105"
         }
     }
 }

tests/parsers/revvity_kaleido/testdata/fluorescence/fluorescence_endpoint_single_plate_example_01.json

@@ -24207,15 +24207,7 @@
             "software name": "Kaleido",
             "software version": "3.0.3067.117",
             "ASM converter name": "allotropy_revvity_kaleido",
-            "ASM converter version": "0.1.104"
-        },
-        "custom information document": {
-            "measurement finished": "2022-11-10 12:14:17",
-            "protocol name": "foo",
-            "barcode": "V-2022-11-10 12:11:46",
-            "protocol owner": "Admin",
-            "software version": "Kaleido 3.0.3067.117",
-            "sequence executed by": "Plate Stack"
+            "ASM converter version": "0.1.105"
         }
     }
 }

tests/parsers/revvity_kaleido/testdata/fluorescence/fluorescence_v3.5_pure_csv_format_example.json

@@ -6063,16 +6063,7 @@
             "software name": "Kaleido",
             "software version": "3.5.3082.227",
             "ASM converter name": "allotropy_revvity_kaleido",
-            "ASM converter version": "0.1.104"
-        },
-        "custom information document": {
-            "measurement finished": "10/8/2024 12:11",
-            "protocol owner": "thomasjm",
-            "barcode": "BARCODE_1 12:10:14",
-            "nan": "0\nnan    NaN\nnan    NaN\nnan    NaN\nName: 2, dtype: object",
-            "sequence executed by": "Plate",
-            "software version": "Kaleido 3.5.3082.227",
-            "protocol name": "EXAMPLE PROTOCOL 1"
+            "ASM converter version": "0.1.105"
         }
     }
 }