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felipenarvfelipenarv
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Added get_unread info
1 parent d85aee2 commit 9eebab1

5 files changed

Lines changed: 421 additions & 4 deletions

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‎src/allotropy/parsers/beckman_vi_cell_blu/vi_cell_blu_structure.py‎

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@@ -53,6 +53,7 @@ def create_measurement_group(data: SeriesData) -> MeasurementGroup:
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average_viable_cell_circularity=data.get(
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float, "Average viable circularity"
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),
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custom_info=data.get_unread(),
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)
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],
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)

‎tests/parsers/beckman_vi_cell_blu/testdata/Beckman_Vi-Cell-BLU_different_mu_character.json‎

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@@ -75,6 +75,22 @@
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},
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"sample document": {
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"sample identifier": "CLB001"
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},
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"custom information document": {
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"Viable spot area (%)": 5.0,
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"Bubble count": 0.0,
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"Cluster count": 0.0,
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"Images for analysis": 100.0,
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"Cell sharpness": 7.0,
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"Wash": "Normal Wash",
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"Decluster degree": "Medium",
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"Minimum circularity": 0.1,
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"Viable spot brightness (%)": 50.0,
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"Mixing cycles": 3.0,
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"Aspiration cycles": 3.0,
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"Average cells per image": 21.0,
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"Average background intensity": 134.0,
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"Images": 100.0
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}
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}
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]
@@ -88,7 +104,7 @@
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"file name": "Beckman_Vi-Cell-BLU_different_mu_character.csv",
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"UNC path": "tests/parsers/beckman_vi_cell_blu/testdata/Beckman_Vi-Cell-BLU_different_mu_character.csv",
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"ASM converter name": "allotropy_beckman_coulter_vi_cell_blu",
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"ASM converter version": "0.1.69",
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"ASM converter version": "0.1.94",
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"software name": "Vi-Cell BLU"
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},
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"device system document": {

‎tests/parsers/beckman_vi_cell_blu/testdata/Beckman_Vi-Cell-BLU_example01.json‎

Lines changed: 161 additions & 1 deletion
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@@ -75,6 +75,22 @@
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},
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"sample document": {
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"sample identifier": "CLB001"
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},
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"custom information document": {
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"Viable spot area (%)": 5.0,
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"Cluster count": 0.0,
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"Minimum circularity": 0.1,
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"Cell sharpness": 7.0,
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"Images": 100.0,
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"Bubble count": 0.0,
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"Average background intensity": 134.0,
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"Wash": "Normal Wash",
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"Average cells per image": 21.0,
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"Mixing cycles": 3.0,
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"Aspiration cycles": 3.0,
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"Decluster degree": "Medium",
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"Viable spot brightness (%)": 50.0,
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"Images for analysis": 100.0
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}
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}
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]
@@ -154,6 +170,22 @@
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},
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"sample document": {
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"sample identifier": "CLB002"
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},
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"custom information document": {
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"Viable spot area (%)": 5.0,
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"Cluster count": 0.0,
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"Minimum circularity": 0.1,
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"Cell sharpness": 7.0,
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"Images": 100.0,
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"Bubble count": 0.0,
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"Average background intensity": 135.0,
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"Wash": "Normal Wash",
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"Average cells per image": 76.0,
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"Mixing cycles": 3.0,
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"Aspiration cycles": 3.0,
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"Decluster degree": "Medium",
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"Viable spot brightness (%)": 50.0,
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"Images for analysis": 100.0
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}
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}
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]
@@ -233,6 +265,22 @@
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},
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"sample document": {
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"sample identifier": "CLB003"
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},
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"custom information document": {
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"Viable spot area (%)": 5.0,
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"Cluster count": 0.0,
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"Minimum circularity": 0.1,
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"Cell sharpness": 7.0,
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"Images": 100.0,
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"Bubble count": 0.0,
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"Average background intensity": 134.0,
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"Wash": "Normal Wash",
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"Average cells per image": 15.0,
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"Mixing cycles": 3.0,
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"Aspiration cycles": 3.0,
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"Decluster degree": "Medium",
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"Viable spot brightness (%)": 50.0,
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"Images for analysis": 100.0
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}
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}
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]
@@ -312,6 +360,22 @@
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},
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"sample document": {
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"sample identifier": "CLB005"
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},
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"custom information document": {
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"Viable spot area (%)": 5.0,
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"Cluster count": 0.0,
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"Minimum circularity": 0.1,
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"Cell sharpness": 7.0,
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"Images": 100.0,
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"Bubble count": 0.0,
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"Average background intensity": 134.0,
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"Wash": "Normal Wash",
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"Average cells per image": 31.0,
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"Mixing cycles": 3.0,
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"Aspiration cycles": 3.0,
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"Decluster degree": "Medium",
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"Viable spot brightness (%)": 50.0,
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"Images for analysis": 100.0
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}
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}
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]
@@ -391,6 +455,22 @@
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},
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"sample document": {
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"sample identifier": "CLB006"
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},
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"custom information document": {
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"Viable spot area (%)": 5.0,
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"Cluster count": 0.0,
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"Minimum circularity": 0.1,
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"Cell sharpness": 7.0,
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"Images": 100.0,
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"Bubble count": 0.0,
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"Average background intensity": 134.0,
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"Wash": "Normal Wash",
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"Average cells per image": 24.0,
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"Mixing cycles": 3.0,
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"Aspiration cycles": 3.0,
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"Decluster degree": "Medium",
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"Viable spot brightness (%)": 50.0,
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"Images for analysis": 100.0
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}
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}
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]
@@ -470,6 +550,22 @@
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},
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"sample document": {
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"sample identifier": "CLB007"
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},
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"custom information document": {
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"Viable spot area (%)": 5.0,
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"Cluster count": 0.0,
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"Minimum circularity": 0.1,
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"Cell sharpness": 7.0,
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"Images": 100.0,
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"Bubble count": 0.0,
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"Average background intensity": 134.0,
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"Wash": "Normal Wash",
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"Average cells per image": 29.0,
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"Mixing cycles": 3.0,
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"Aspiration cycles": 3.0,
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"Decluster degree": "Medium",
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"Viable spot brightness (%)": 50.0,
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"Images for analysis": 100.0
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}
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}
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]
@@ -541,6 +637,22 @@
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},
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"sample document": {
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"sample identifier": "CLB008"
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},
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"custom information document": {
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"Viable spot area (%)": 5.0,
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"Cluster count": 4.0,
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"Minimum circularity": 0.1,
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"Cell sharpness": 7.0,
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"Images": 100.0,
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"Bubble count": 0.0,
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"Average background intensity": 134.0,
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"Wash": "Normal Wash",
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"Average cells per image": 70.0,
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"Mixing cycles": 3.0,
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"Aspiration cycles": 3.0,
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"Decluster degree": "Medium",
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"Viable spot brightness (%)": 50.0,
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"Images for analysis": 100.0
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}
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}
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]
@@ -620,6 +732,22 @@
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},
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"sample document": {
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"sample identifier": "CLB009"
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},
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"custom information document": {
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"Viable spot area (%)": 5.0,
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"Cluster count": 0.0,
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"Minimum circularity": 0.1,
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"Cell sharpness": 7.0,
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"Images": 100.0,
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"Bubble count": 0.0,
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"Average background intensity": 135.0,
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"Wash": "Normal Wash",
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"Average cells per image": 52.0,
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"Mixing cycles": 3.0,
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"Aspiration cycles": 3.0,
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"Decluster degree": "Medium",
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"Viable spot brightness (%)": 50.0,
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"Images for analysis": 100.0
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}
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}
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]
@@ -699,6 +827,22 @@
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},
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"sample document": {
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"sample identifier": "CLB010"
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},
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"custom information document": {
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"Viable spot area (%)": 5.0,
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"Cluster count": 24.0,
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"Minimum circularity": 0.1,
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"Cell sharpness": 7.0,
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"Images": 100.0,
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"Bubble count": 0.0,
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"Average background intensity": 134.0,
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"Wash": "Normal Wash",
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"Average cells per image": 113.0,
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"Mixing cycles": 3.0,
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"Aspiration cycles": 3.0,
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"Decluster degree": "Medium",
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"Viable spot brightness (%)": 50.0,
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"Images for analysis": 100.0
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}
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}
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]
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},
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"sample document": {
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"sample identifier": "CLB011"
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},
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"custom information document": {
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"Viable spot area (%)": 5.0,
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"Cluster count": 7.0,
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"Minimum circularity": 0.1,
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"Cell sharpness": 7.0,
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"Images": 100.0,
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"Bubble count": 0.0,
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"Average background intensity": 135.0,
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"Wash": "Normal Wash",
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"Average cells per image": 97.0,
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"Mixing cycles": 3.0,
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"Aspiration cycles": 3.0,
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"Decluster degree": "Medium",
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"Viable spot brightness (%)": 50.0,
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"Images for analysis": 100.0
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}
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}
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]
@@ -791,7 +951,7 @@
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"file name": "Beckman_Vi-Cell-BLU_example01.csv",
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"UNC path": "tests/parsers/beckman_vi_cell_blu/testdata/Beckman_Vi-Cell-BLU_example01.csv",
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"ASM converter name": "allotropy_beckman_coulter_vi_cell_blu",
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"ASM converter version": "0.1.69",
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"ASM converter version": "0.1.94",
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"software name": "Vi-Cell BLU"
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},
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"device system document": {

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