chore: Add UNREAD_DATA_HANDLED to trigger unread data warnings for migrated parsers

pyproject.toml

@@ -174,7 +174,7 @@ extra-dependencies = [
   "pandas-stubs == 2.1.4.231227",
   "types-olefile",
   # For pytest types
-  "pytest >= 7.4.0",
+  "pytest >= 8.4.1",
   # For check graph generation
   "networkx-stubs",
 ]
@@ -207,9 +207,10 @@ extra-dependencies = [
   "coverage[toml] >= 6.5",
   "deepdiff >= 6.5.0",
   "more-itertools >= 10.1.0",
-  "pytest >= 7.4.0",
-  "pytest-xdist >= 3.6.1",
-  "types-olefile"
+  "pluggy >= 1.6.0",
+  "pytest >= 8.4.1",
+  "pytest-xdist >= 3.8.0",
+  "types-olefile",
 ]
 
 [tool.hatch.envs.test.scripts]
@@ -230,6 +231,7 @@ cov = [
 pythonpath = "src"
 markers = [
   "long: mark a test that takes a long time to run",
+  "skip_ignore_unread_warnings: mark a test should warn for unread data - only intended to be used in to_allotrope_test.py",
 ]
 
 [tool.ruff]

src/allotropy/parser_factory.py

@@ -182,6 +182,10 @@ class Vendor(Enum):
     def display_name(self) -> str:
         return self.get_parser().DISPLAY_NAME
 
+    @property
+    def unread_data_handled(self) -> bool:
+        return self.get_parser().UNREAD_DATA_HANDLED
+
     @property
     def release_state(self) -> ReleaseState:
         return self.get_parser().RELEASE_STATE

src/allotropy/parsers/agilent_gen5/agilent_gen5_parser.py

@@ -24,6 +24,7 @@ class AgilentGen5Parser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = AgilentGen5Reader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = True
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = AgilentGen5Reader(named_file_contents)

src/allotropy/parsers/agilent_gen5_image/agilent_gen5_image_parser.py

@@ -25,6 +25,7 @@ class AgilentGen5ImageParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = AgilentGen5Reader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = True
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = AgilentGen5Reader(named_file_contents)

src/allotropy/parsers/agilent_openlab_cds/agilent_openlab_cds_parser.py

@@ -24,6 +24,7 @@ class AgilentOpenLabCDSParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = "rslt"
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = False
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         structured_data = decode_data(named_file_contents.get_bytes_stream())

src/allotropy/parsers/agilent_tapestation_analysis/agilent_tapestation_analysis_parser.py

@@ -22,6 +22,7 @@ class AgilentTapestationAnalysisParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = "xml"
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = False
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         try:

src/allotropy/parsers/appbio_absolute_q/appbio_absolute_q_parser.py

@@ -25,6 +25,7 @@ class AppbioAbsoluteQParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = AppbioAbsoluteQReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = True
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = AppbioAbsoluteQReader(named_file_contents)

src/allotropy/parsers/appbio_quantstudio/appbio_quantstudio_parser.py

@@ -29,6 +29,7 @@ class AppBioQuantStudioParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = AppBioQuantStudioReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = False
 
     def parse_data(
         self, reader: AppBioQuantStudioReader, original_file_path: str

src/allotropy/parsers/appbio_quantstudio_designandanalysis/appbio_quantstudio_designandanalysis_parser.py

@@ -29,6 +29,7 @@ class AppBioQuantStudioDesignandanalysisParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = DesignQuantstudioReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = True
 
     def parse_rt_pcr(
         self, reader: DesignQuantstudioReader, original_file_path: str

src/allotropy/parsers/bd_biosciences_facsdiva/bd_biosciences_facsdiva_parser.py

@@ -24,6 +24,7 @@ class BDFACSDivaParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = "xml"
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = False
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         try:

src/allotropy/parsers/beckman_coulter_biomek/beckman_coulter_biomek_parser.py

@@ -23,6 +23,7 @@ class BeckmanCoulterBiomekParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = BeckmanCoulterBiomekReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = False
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = BeckmanCoulterBiomekReader(named_file_contents)

src/allotropy/parsers/beckman_echo_plate_reformat/beckman_echo_plate_reformat_parser.py

@@ -25,6 +25,7 @@ class BeckmanEchoPlateReformatParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = BeckmanEchoPlateReformatReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = True
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = BeckmanEchoPlateReformatReader(named_file_contents)

src/allotropy/parsers/beckman_pharmspec/beckman_pharmspec_parser.py

@@ -25,6 +25,7 @@ class PharmSpecParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = BeckmanPharmspecReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = False
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = BeckmanPharmspecReader(named_file_contents)

src/allotropy/parsers/beckman_vi_cell_blu/vi_cell_blu_parser.py

@@ -23,6 +23,7 @@ class ViCellBluParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = ViCellBluReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = True
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         return Data(

src/allotropy/parsers/beckman_vi_cell_xr/vi_cell_xr_parser.py

@@ -23,6 +23,7 @@ class ViCellXRParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = "txt,xls,xlsx"
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = True
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader_data = create_reader_data(named_file_contents)

src/allotropy/parsers/beckman_vi_cell_xr/vi_cell_xr_reader.py

@@ -124,7 +124,9 @@ def _get_file_info(self) -> SeriesData:
             usecols=[0],
         ).squeeze()
         info.index = pd.Index(["model", "filepath", "serial"])
-        return SeriesData(info)
+        data = SeriesData(info)
+        data.mark_read("filepath")
+        return data
 
 
 class ViCellXRTXTReader:

src/allotropy/parsers/benchling_chromeleon/benchling_chromeleon_parser.py

@@ -23,6 +23,7 @@ class BenchlingChromeleonParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = BenchlingChromeleonReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = False
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = BenchlingChromeleonReader(named_file_contents)

src/allotropy/parsers/benchling_empower/benchling_empower_parser.py

@@ -23,6 +23,7 @@ class BenchlingEmpowerParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = BenchlingEmpowerReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = True
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = BenchlingEmpowerReader(named_file_contents)

src/allotropy/parsers/biorad_bioplex_manager/biorad_bioplex_manager_parser.py

@@ -27,6 +27,7 @@ class BioradBioplexParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = "xml"
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = False
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = BioradBioplexReader(named_file_contents)

src/allotropy/parsers/bmg_labtech_smart_control/bmg_labtech_smart_control_parser.py

@@ -27,6 +27,7 @@ class BmgLabtechSmartControlParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = BmgLabtechSmartControlReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = True
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = BmgLabtechSmartControlReader(named_file_contents)

src/allotropy/parsers/bmg_labtech_smart_control/bmg_labtech_smart_control_structure.py

@@ -181,7 +181,7 @@ def create_calculated_data_documents(
     measurements = [group.measurements[0] for group in measurement_groups]
     calc_data_measurements = []
     for idx, measurement in enumerate(measurements):
-        corrected_value = SeriesData(reader.data.iloc[idx]).get(
+        corrected_value = SeriesData(reader.data.iloc[idx], ignore_unread=True).get(
             float, "Blank corrected based on Raw Data (480-14/520-30)"
         )
         calc_data_measurements.append(

src/allotropy/parsers/bmg_mars/bmg_mars_parser.py

@@ -23,6 +23,7 @@ class BmgMarsParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = "csv"
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = False
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = BmgMarsReader(named_file_contents)

src/allotropy/parsers/cfxmaestro/cfxmaestro_parser.py

@@ -18,6 +18,7 @@ class CfxmaestroParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = CFXMaestroReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = True
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = CFXMaestroReader(named_file_contents)

src/allotropy/parsers/cfxmaestro/cfxmaestro_structure.py

@@ -64,12 +64,7 @@ def create_measurement_group(
             set(constants.PROCESSED_DATA_DOCUMENT_CUSTOM_KEYS)
         )
         # these fields are not need in the asm
-        data.mark_read(
-            {
-                "Cq Mean",
-                "Unnamed: 0",
-            }
-        )
+        data.mark_read({"Cq Mean", "Unnamed: 0"})
         measurements.append(
             Measurement(
                 # Measurement metadata

src/allotropy/parsers/chemometec_nc_view/chemometec_nc_view_parser.py

@@ -24,6 +24,7 @@ class ChemometecNcViewParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = ChemometecNcViewReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = False
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = ChemometecNcViewReader(named_file_contents)

src/allotropy/parsers/chemometec_nucleoview/nucleoview_parser.py

@@ -21,6 +21,7 @@ class ChemometecNucleoviewParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = NucleoviewReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = True
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         df = NucleoviewReader.read(named_file_contents.contents)

src/allotropy/parsers/ctl_immunospot/ctl_immunospot_parser.py

@@ -20,6 +20,7 @@ class CtlImmunospotParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = CtlImmunospotReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = False
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = CtlImmunospotReader(named_file_contents)

src/allotropy/parsers/cytiva_biacore_t200_control/cytiva_biacore_t200_control_parser.py

@@ -27,6 +27,7 @@ class CytivaBiacoreT200ControlParser(VendorParser[MapperData, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = "blr"
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = False
 
     def create_data(self, named_file_contents: NamedFileContents) -> MapperData:
         data = Data.create(decode_data(named_file_contents))

src/allotropy/parsers/cytiva_unicorn/cytiva_unicorn_parser.py

@@ -25,6 +25,7 @@ class CytivaUnicornParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = "zip"
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = True
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         handler = UnicornZipHandler(named_file_contents.get_bytes_stream())

src/allotropy/parsers/example_weyland_yutani/example_weyland_yutani_parser.py

@@ -26,6 +26,7 @@ class ExampleWeylandYutaniParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.WORKING_DRAFT
     SUPPORTED_EXTENSIONS = ExampleWeylandYutaniReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = False
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = ExampleWeylandYutaniReader(named_file_contents)

src/allotropy/parsers/flowjo/flowjo_parser.py

@@ -60,6 +60,7 @@ class FlowjoParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = "wsp"
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = True
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         try:

src/allotropy/parsers/luminex_intelliflex/luminex_intelliflex_parser.py

@@ -26,6 +26,7 @@ class LuminexIntelliflexParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = LuminexXponentReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = False
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = LuminexXponentReader(named_file_contents)

src/allotropy/parsers/luminex_xponent/luminex_xponent_parser.py

@@ -23,6 +23,7 @@ class LuminexXponentParser(VendorParser[MapperData, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = LuminexXponentReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = True
 
     def create_data(self, named_file_contents: NamedFileContents) -> MapperData:
         reader = LuminexXponentReader(named_file_contents)

src/allotropy/parsers/mabtech_apex/mabtech_apex_parser.py

@@ -25,6 +25,7 @@ class MabtechApexParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = MabtechApexReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = True
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = MabtechApexReader.create(named_file_contents)

src/allotropy/parsers/methodical_mind/methodical_mind_parser.py

@@ -26,6 +26,7 @@ class MethodicalMindParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = "txt"
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = True
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = MethodicalMindReader(named_file_contents)

src/allotropy/parsers/moldev_softmax_pro/softmax_pro_parser.py

@@ -22,6 +22,7 @@ class SoftmaxproParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = "txt"
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = False
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         lines = read_to_lines(named_file_contents)

src/allotropy/parsers/msd_workbench/msd_workbench_parser.py

@@ -37,6 +37,7 @@ class MSDWorkbenchParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = MSDWorkbenchReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = True
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         if named_file_contents.extension == "txt":

src/allotropy/parsers/novabio_flex2/novabio_flex2_parser.py

@@ -25,6 +25,7 @@ class NovaBioFlexParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = "csv"
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = False
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         try:

src/allotropy/parsers/perkin_elmer_envision/perkin_elmer_envision_parser.py

@@ -24,6 +24,7 @@ class PerkinElmerEnvisionParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = "csv"
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = False
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         lines = read_to_lines(named_file_contents)

src/allotropy/parsers/qiacuity_dpcr/qiacuity_dpcr_parser.py

@@ -22,6 +22,7 @@ class QiacuitydPCRParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = QiacuitydPCRReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = False
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = QiacuitydPCRReader(named_file_contents)

src/allotropy/parsers/revvity_kaleido/kaleido_parser.py

@@ -21,6 +21,7 @@ class KaleidoParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SCHEMA_MAPPER = Mapper
     SUPPORTED_EXTENSIONS = "csv"
+    UNREAD_DATA_HANDLED = False
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         data = create_data(CsvReader(read_to_lines(named_file_contents)))

src/allotropy/parsers/revvity_matrix/revvity_matrix_parser.py

@@ -26,6 +26,7 @@ class RevvityMatrixParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = RevvityMatrixReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = True
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = RevvityMatrixReader(named_file_contents)

src/allotropy/parsers/roche_cedex_bioht/roche_cedex_bioht_parser.py

@@ -24,6 +24,7 @@ class RocheCedexBiohtParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = RocheCedexBiohtReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = False
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = RocheCedexBiohtReader(named_file_contents.contents)

src/allotropy/parsers/roche_cedex_hires/roche_cedex_hires_parser.py

@@ -24,6 +24,7 @@ class RocheCedexHiResParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = RocheCedexHiResReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = True
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = RocheCedexHiResReader(named_file_contents)

src/allotropy/parsers/tecan_magellan/tecan_magellan_parser.py

@@ -27,6 +27,7 @@ class TecanMagellanParser(VendorParser[Data, Model]):
     RELEASE_STATE = ReleaseState.RECOMMENDED
     SUPPORTED_EXTENSIONS = TecanMagellanReader.SUPPORTED_EXTENSIONS
     SCHEMA_MAPPER = Mapper
+    UNREAD_DATA_HANDLED = False
 
     def create_data(self, named_file_contents: NamedFileContents) -> Data:
         reader = TecanMagellanReader(named_file_contents)