From 94f69db03472aafaf5aec86cdedadf27ac137fc3 Mon Sep 17 00:00:00 2001 From: Felipe Narvaez Date: Mon, 25 Aug 2025 11:21:02 -0500 Subject: [PATCH 1/5] Added support for single dataset files --- src/allotropy/parsers/lines_reader.py | 3 + .../parsers/luminex_xponent/constants.py | 50 + .../luminex_xponent/luminex_xponent_reader.py | 319 +- .../luminex_xponent_structure.py | 12 +- .../luminex_intelliflex_single_dataset.csv | 14 + .../luminex_intelliflex_single_dataset.json | 17730 ++++++++++++++++ .../luminex_xponent_structure_test.py | 120 +- 7 files changed, 18234 insertions(+), 14 deletions(-) create mode 100644 tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.csv create mode 100644 tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.json diff --git a/src/allotropy/parsers/lines_reader.py b/src/allotropy/parsers/lines_reader.py index 2bff1cc447..28a14f39b9 100644 --- a/src/allotropy/parsers/lines_reader.py +++ b/src/allotropy/parsers/lines_reader.py @@ -40,6 +40,9 @@ def __init__(self, lines: list[str]) -> None: def line_exists(self, line: int) -> bool: return 0 <= line < len(self.lines) + def line_with_pattern_exists(self, pattern: str) -> bool: + return any(search(pattern, line) for line in self.lines) + def current_line_exists(self) -> bool: return self.line_exists(self.current_line) diff --git a/src/allotropy/parsers/luminex_xponent/constants.py b/src/allotropy/parsers/luminex_xponent/constants.py index 6d473646bf..54dceae701 100644 --- a/src/allotropy/parsers/luminex_xponent/constants.py +++ b/src/allotropy/parsers/luminex_xponent/constants.py @@ -69,3 +69,53 @@ class StatisticSectionConfig: "% Recovery": "(unitless)", "%CV of Replicates": "(unitless)", } + +# Known metric names in the columns of the single dataset results table +SINGLE_DATASET_RESULTS_METRIC_WORDS: set[str] = { + "MEAN", + "MEDIAN", + "COUNT", + "PEAK", + "STDEV", + "STANDARD", + "DEVIATION", + "%CV", + "TRIMMED", + "NET", + "MFI", + "AVERAGE", + "AVG", + "RMS", + "MODE", + "TRMEAN", + "TRIMSTDEV", + "NORMALIZED", + "DILUTION", + "FACTOR", + "SETTING", + "UNITS", +} + +# Allowed section names for Luminex Xponent reports. Any other name should raise an error upstream. +ALLOWED_SECTION_NAMES: set[str] = { + "Median", + "Test Result", + "Range", + "Net MFI", + "Count", + "Mean", + "Avg Net MFI", + "Peak", + "Trimmed Peak", + "Trimmed Count", + "Trimmed Std Dev", + "Std Dev", + "% CV", + "Expected Result", + "Units", + "Per Bead Count", + "Dilution Factor", + "Analysis Types", + "Audit Logs", + "Warnings/Errors", +} diff --git a/src/allotropy/parsers/luminex_xponent/luminex_xponent_reader.py b/src/allotropy/parsers/luminex_xponent/luminex_xponent_reader.py index cd1ca0407c..67af63fb5b 100644 --- a/src/allotropy/parsers/luminex_xponent/luminex_xponent_reader.py +++ b/src/allotropy/parsers/luminex_xponent/luminex_xponent_reader.py @@ -2,6 +2,7 @@ from io import StringIO import re +from typing import cast, ClassVar import pandas as pd @@ -16,20 +17,316 @@ class LuminexXponentReader: SUPPORTED_EXTENSIONS = "csv" - header_data: pd.DataFrame - calibration_data: pd.DataFrame - minimum_assay_bead_count_setting: float | None - results_data: dict[str, pd.DataFrame] - def __init__(self, named_file_contents: NamedFileContents) -> None: - reader = CsvReader(read_to_lines(named_file_contents)) + self.lines = read_to_lines(named_file_contents) + + if LuminexXponentReader._is_single_dataset(self.lines): + ( + self.results_data, + self.header_data, + self.calibration_data, + self.minimum_assay_bead_count_setting, + ) = SingleDatasetParser.parse(self.lines) + else: + reader = CsvReader(self.lines) + ( + self.results_data, + self.header_data, + self.calibration_data, + self.minimum_assay_bead_count_setting, + ) = MultipleDatasetParser.parse(reader) + + @staticmethod + def _is_single_dataset(lines: list[str]) -> bool: + first_line = lines[0] or "" + return ( + "INSTRUMENT TYPE" in first_line + and "WELL LOCATION" in first_line + and "SAMPLE ID" in first_line + ) + + +class SingleDatasetParser: + """ + Adapter to read single dataset CSV exports (all data in a single block) + and yield the same data structures expected by xPONENT-based downstream code. + """ + + # Columns that are always present in the single-dataset CSV export and are not analyte columns + FIXED_INPUT_COLUMNS: ClassVar[list[str]] = [ + "INSTRUMENT TYPE", + "SERIAL NUMBER", + "SOFTWARE VERSION", + "PLATE NAME", + "PLATE START", + "WELL LOCATION", + "SAMPLE ID", + ] + + @staticmethod + def is_reporter_format(lines: list[str]) -> bool: + """Return True if the first line looks like the single-dataset format header.""" + first_line = lines[0] if lines else "" + return ( + "INSTRUMENT TYPE" in first_line + and "WELL LOCATION" in first_line + and "SAMPLE ID" in first_line + ) + + @staticmethod + def parse_header(col: str) -> tuple[str, str] | None: + """Parse a column header into (analyte_label, metric_token). + + The column names have an ID followed by the metric. The metric itself is + composed of space-separated words that must all be included in + constants.SINGLE_DATASET_RESULTS_METRIC_WORDS. We therefore split the + header on spaces and find the earliest split index such that the suffix + (metric) is entirely composed of known metric words (case-insensitive), + assigning the prefix to the analyte label. + """ + header = str(col).strip() + parts = [p for p in header.split(" ") if p] + if len(parts) < 2: + return None + + # Compare words case-insensitively, without extra cleaning + cleaned = [p.upper() for p in parts] + + # Find earliest index where the suffix is all known metric words + split_index: int | None = None + for i in range(1, len(parts)): + suffix = cleaned[i:] + if suffix and all( + s in constants.SINGLE_DATASET_RESULTS_METRIC_WORDS for s in suffix + ): + split_index = i + break + + if split_index is None: + return None + + analyte_part = " ".join(parts[:split_index]).strip() + metric_part = " ".join(parts[split_index:]).strip() + if not analyte_part or not metric_part: + return None + return analyte_part, metric_part + + @staticmethod + def section_name_from_metric(metric_token: str) -> str: + """Map raw metric tokens to xPONENT-style section names.""" + token_upper = metric_token.upper().strip() + if token_upper.endswith("AVERAGE MFI"): + return "Avg Net MFI" + # Title-case fallback for all other tokens + return metric_token.title() + + @staticmethod + def build_section( + df: pd.DataFrame, + analyte_labels: list[str], + headers_map: dict[tuple[str, str], str], + metric_token: str, + ) -> pd.DataFrame | None: + """Build a results section dataframe for the given metric. + + Returns None if no analyte column exists for this metric in the input. + """ + + if metric_token.upper().strip() == "UNITS": + return SingleDatasetParser.build_units_section( + df, analyte_labels, headers_map + ) + + at_least_one_present = False + out = pd.DataFrame() + out["Location"] = [f"1(1,{w})" for w in df["WELL LOCATION"].astype(str)] + out["Sample"] = df["SAMPLE ID"].astype(str) + for analyte in analyte_labels: + src_col = headers_map.get((analyte, metric_token)) + if src_col: + at_least_one_present = True + out[analyte] = df[src_col] if src_col in df.columns else "" + + if not at_least_one_present: + return None + + if metric_token == "COUNT": # noqa: S105 + analyte_cols = analyte_labels + # Convert each analyte column to numeric, coercing errors to NaN then filling with 0.0 + converted = cast( + pd.DataFrame, + out[analyte_cols].apply(pd.to_numeric, errors="coerce").fillna(0.0), + ) + out["Total Events"] = converted.sum(axis=1) + else: + out["Total Events"] = "" + return out.set_index("Location") - self.header_data = self._get_header_data(reader) - self.calibration_data = self._get_calibration_data(reader) - self.minimum_assay_bead_count_setting = ( - self._get_minimum_assay_bead_count_setting(reader) + @staticmethod + def build_units_section( + df: pd.DataFrame, + analyte_labels: list[str], + headers_map: dict[tuple[str, str], str], + ) -> pd.DataFrame: + """Build a units section dataframe for the given analyte labels.""" + units_list = [] + at_least_one_present = False + for analyte in analyte_labels: + src_col = headers_map.get((analyte, "UNITS")) + units_list.append(df[src_col][0] if src_col in df.columns else "") + if src_col: + at_least_one_present = True + + if not at_least_one_present: + return pd.DataFrame() + + columns = ["Analyte:", *analyte_labels] + units: pd.DataFrame = pd.DataFrame( + [ + columns, + ["BeadID:", *units_list], + ["Units:", *[""] * len(analyte_labels)], + ], + index=["Analyte:", "BeadID:", "Units:"], + columns=columns, + ) + + return units + + @staticmethod + def add_mandatory_columns( + results: dict[str, pd.DataFrame], + base_df: pd.DataFrame, + analyte_labels: list[str], + ) -> None: + """Ensure required sections exist (Units, Dilution Factor).""" + if "Dilution Factor" not in results: + results["Dilution Factor"] = pd.DataFrame() + results["Dilution Factor"]["Location"] = [ + f"1(1,{w})" for w in base_df["WELL LOCATION"].astype(str) + ] + results["Dilution Factor"]["Sample"] = base_df["SAMPLE ID"].astype(str) + results["Dilution Factor"]["Dilution Factor"] = "" + results["Dilution Factor"] = results["Dilution Factor"].set_index( + "Location" + ) + if "Units" not in results: + units_df = pd.DataFrame( + [ + ["Analyte:", *analyte_labels], + ["BeadID:"], + ["Units:"], + ], + index=["Analyte:", "BeadID:", "Units:"], + columns=["Analyte:", *analyte_labels], + ) + results["Units"] = units_df + + @classmethod + def parse( + cls, lines: list[str] + ) -> tuple[dict[str, pd.DataFrame], pd.DataFrame, pd.DataFrame, float | None]: + """Parse single-dataset CSV and return header, calibration, min beads and results tables.""" + df = read_csv(StringIO("\n".join(lines)), header=0) + + analyte_labels: list[str] = [] + seen_labels: set[str] = set() + headers_map: dict[tuple[str, str], str] = {} + metric_tokens_ordered: list[str] = [] + seen_metric_tokens: set[str] = set() + for col in df.columns: + if col in cls.FIXED_INPUT_COLUMNS: + continue + parsed = cls.parse_header(str(col)) + if not parsed: + continue + analyte_label, metric = parsed + headers_map[(analyte_label, metric)] = str(col) + if ( + metric.upper().strip().endswith("COUNT") + and analyte_label not in seen_labels + ): + analyte_labels.append(analyte_label) + seen_labels.add(analyte_label) + if metric not in seen_metric_tokens: + metric_tokens_ordered.append(metric) + seen_metric_tokens.add(metric) + + results: dict[str, pd.DataFrame] = {} + + for token in metric_tokens_ordered: + section_name = cls.section_name_from_metric(token) + section_df = cls.build_section(df, analyte_labels, headers_map, token) + if section_df is not None: + results[section_name] = section_df + + cls.add_mandatory_columns(results, df, analyte_labels) + + # Safely extract optional fields from the input DataFrame without mypy complaints + _serial_series = ( + df["SERIAL NUMBER"] if "SERIAL NUMBER" in df.columns else pd.Series([""]) + ) + _serial_value = str(_serial_series.iloc[0]) if len(_serial_series) > 0 else "" + _plate_series = ( + df["PLATE START"] if "PLATE START" in df.columns else pd.Series([""]) + ) + _plate_value = str(_plate_series.iloc[0]) if len(_plate_series) > 0 else "" + + header = ( + pd.DataFrame( + { + 0: [ + "Program", + "Build", + "Date", + "SN", + "ProtocolPlate", + "ComputerName", + "BatchStartTime", + ], + 1: [ + "xPONENT", + "Unknown", + "", + _serial_value, + "Name", + "", + _plate_value, + ], + 2: ["", "", "", "", "", "", ""], + 3: ["", "", "", "", "", "", ""], + 4: ["", "", "", "", "", "", ""], + 5: ["", "", "", "", "", "", ""], + } + ) + .set_index(0) + .T + ) + + calibration = pd.DataFrame() + min_beads: float | None = None + + return results, header, calibration, min_beads + + +class MultipleDatasetParser: + @classmethod + def parse( + cls, reader: CsvReader + ) -> tuple[dict[str, pd.DataFrame], pd.DataFrame, pd.DataFrame, float | None]: + + header_data = cls._get_header_data(reader) + calibration_data = cls._get_calibration_data(reader) + minimum_assay_bead_count_setting = cls._get_minimum_assay_bead_count_setting( + reader + ) + results_data = cls._get_results(reader) + return ( + results_data, + header_data, + calibration_data, + minimum_assay_bead_count_setting, ) - self.results_data = LuminexXponentReader._get_results(reader) @classmethod def _get_header_data(cls, reader: CsvReader) -> pd.DataFrame: diff --git a/src/allotropy/parsers/luminex_xponent/luminex_xponent_structure.py b/src/allotropy/parsers/luminex_xponent/luminex_xponent_structure.py index a08b74a1d3..f3165f437a 100644 --- a/src/allotropy/parsers/luminex_xponent/luminex_xponent_structure.py +++ b/src/allotropy/parsers/luminex_xponent/luminex_xponent_structure.py @@ -138,7 +138,8 @@ def _get_plate_well_count(cls, header_data: pd.DataFrame) -> float: msg = "Unable to find plate well count in ProtocolPlate row, expected value at index 3." raise AllotropeConversionError(msg) from e - return try_float(str(plate_well_count), "plate well count") + plate_well_count = try_non_nan_float_or_none(str(plate_well_count)) + return plate_well_count or -0.0 def create_calibration(calibration_data: SeriesData) -> Calibration: @@ -273,11 +274,18 @@ def get_statistic_dimensions(analyte: str) -> list[StatisticDimension]: key for key in count_data.series.index if key not in metadata_keys ] for analyte in analyte_keys: + assay_bead_identifier = bead_ids_data.get(str, analyte, "") + if not assay_bead_identifier: + errors.append( + Error( + error="Not reported", feature=f"{analyte} assay bead identifier" + ) + ) analytes.append( Analyte( identifier=(analyte_identifier := random_uuid_str()), name=analyte, - assay_bead_identifier=bead_ids_data[str, analyte], + assay_bead_identifier=assay_bead_identifier, assay_bead_count=count_data[float, analyte], statistics=[ StatisticsDocument( diff --git a/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.csv b/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.csv new file mode 100644 index 0000000000..a109099c20 --- /dev/null +++ b/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.csv @@ -0,0 +1,14 @@ +INSTRUMENT TYPE,SERIAL NUMBER,SOFTWARE VERSION,PLATE NAME,PLATE START,WELL LOCATION,SAMPLE ID,R25: RP1 MEDIAN,R25: RP1 COUNT,R25: RP1 AVERAGE MFI,R25: RP2 MEDIAN,R25: RP2 COUNT,R25: RP2 AVERAGE MFI,R27: RP1 MEDIAN,R27: RP1 COUNT,R27: RP1 AVERAGE MFI,R27: RP2 MEDIAN,R27: RP2 COUNT,R27: RP2 AVERAGE MFI,R29: RP1 MEDIAN,R29: RP1 COUNT,R29: RP1 AVERAGE MFI,R29: RP2 MEDIAN,R29: RP2 COUNT,R29: RP2 AVERAGE MFI,R42: RP1 MEDIAN,R42: RP1 COUNT,R42: RP1 AVERAGE MFI,R42: RP2 MEDIAN,R42: RP2 COUNT,R42: RP2 AVERAGE MFI,R44: RP1 MEDIAN,R44: RP1 COUNT,R44: RP1 AVERAGE MFI,R44: RP2 MEDIAN,R44: RP2 COUNT,R44: RP2 AVERAGE MFI,R46: RP1 MEDIAN,R46: RP1 COUNT,R46: RP1 AVERAGE MFI,R46: RP2 MEDIAN,R46: RP2 COUNT,R46: RP2 AVERAGE MFI,R48: RP1 MEDIAN,R48: RP1 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"http://purl.allotrope.org/manifests/multi-analyte-profiling/BENCHLING/2024/09/multi-analyte-profiling.manifest", + "multi analyte profiling aggregate document": { + "multi analyte profiling document": [ + { + "measurement aggregate document": { + "measurement document": [ + { + "device control aggregate document": { + "device control document": [ + { + "device type": "multi analyte profiling analyzer", + "dilution factor setting": { + "value": -0.0, + "unit": "(unitless)" + } + } + ] + }, + "measurement identifier": "LUMINEX_INTELLIFLEX_TEST_ID_0", + "measurement time": "2024-11-08T12:12:17+00:00", + "sample document": { + "sample identifier": "Unknown1", + "location identifier": "A1" + }, + "error aggregate document": { + "error document": [ + { + "error": "Not reported in file", + "error feature": "dilution factor setting" + }, + { + "error": "Not reported", + "error feature": "R25: RP1 assay bead identifier" + }, + { + "error": "Not reported", + "error feature": "R25: RP2 assay 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"error": "Not reported", + "error feature": "R48: RP2 assay bead identifier" + }, + { + "error": "Not reported", + "error feature": "R61: RP1 assay bead identifier" + }, + { + "error": "Not reported", + "error feature": "R61: RP2 assay bead identifier" + }, + { + "error": "Not reported", + "error feature": "R63: RP1 assay bead identifier" + }, + { + "error": "Not reported", + "error feature": "R63: RP2 assay bead identifier" + }, + { + "error": "Not reported", + "error feature": "R65: RP1 assay bead identifier" + }, + { + "error": "Not reported", + "error feature": "R65: RP2 assay bead identifier" + }, + { + "error": "Not reported", + "error feature": "R67: RP1 assay bead identifier" + }, + { + "error": "Not reported", + "error feature": "R67: RP2 assay bead identifier" + }, + { + "error": "Not reported", + "error feature": "R72: RP1 assay bead identifier" + }, + { + "error": "Not reported", + "error feature": "R72: RP2 assay bead identifier" + }, + { + "error": "Not reported", + "error feature": "R74: RP1 assay bead identifier" + }, + { + "error": "Not reported", + "error feature": "R74: RP2 assay bead identifier" + }, + { + "error": "Not reported", + "error feature": "R77: RP1 assay bead identifier" + }, + { + "error": "Not reported", + "error feature": "R77: RP2 assay bead identifier" + } + ] + }, + "assay bead count": { + "value": 1022.0, + "unit": "#" + }, + "analyte aggregate document": { + "analyte document": [ + { + "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_1", + "analyte name": "R25: RP1", + "assay bead identifier": "", + "assay bead count": { + "value": 28.0, + "unit": "#" + }, + "statistics aggregate document": { + "statistics document": [ + { + "statistical feature": "fluorescence", + "statistic dimension aggregate document": { + "statistic dimension document": [ + { + "statistical value": { + "value": 130.55469, + "unit": "RFU", + "has statistic datum role": "median role" + } + } + ] + } + } + ] + } + }, + { + "analyte identifier": 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"LUMINEX_INTELLIFLEX_TEST_ID_731", + "data source feature": "fluorescence" + } + ] + } + }, + { + "calculated data name": "Avg Net MFI", + "calculated result": { + "value": 113.82227, + "unit": "RFU" + }, + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_734", + "data source aggregate document": { + "data source document": [ + { + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_733", + "data source feature": "fluorescence" + } + ] + } + }, + { + "calculated data name": "Avg Net MFI", + "calculated result": { + "value": 7.21484, + "unit": "RFU" + }, + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_736", + "data source aggregate document": { + "data source document": [ + { + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_735", + "data source feature": "fluorescence" + } + ] + } + }, + { + "calculated data name": "Avg Net MFI", + "calculated result": { + "value": 117.31836, + "unit": "RFU" + }, + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_738", + "data source aggregate document": { + "data source document": [ + { + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_737", + "data source feature": "fluorescence" + } + ] + } + }, + { + "calculated data name": "Avg Net MFI", + "calculated result": { + "value": 5.62109, + "unit": "RFU" + }, + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_740", + "data source aggregate document": { + "data source document": [ + { + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_739", + "data source feature": "fluorescence" + } + ] + } + } + ] + }, + "data system document": { + "ASM file identifier": "luminex_intelliflex_single_dataset.json", + "data system instance identifier": "", + "file name": "luminex_intelliflex_single_dataset.csv", + "UNC path": "tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.csv", + "ASM converter name": "allotropy_luminex_intelliflex", + "ASM converter version": "0.1.103", + "software name": "INTELLIFLEX", + "software version": "Unknown" + }, + "device system document": { + "equipment serial number": "IFLEXP24099001" + } + } +} diff --git a/tests/parsers/luminex_xponent/luminex_xponent_structure_test.py b/tests/parsers/luminex_xponent/luminex_xponent_structure_test.py index ac429699e8..987766b53a 100644 --- a/tests/parsers/luminex_xponent/luminex_xponent_structure_test.py +++ b/tests/parsers/luminex_xponent/luminex_xponent_structure_test.py @@ -19,6 +19,8 @@ from allotropy.parsers.luminex_xponent import constants from allotropy.parsers.luminex_xponent.luminex_xponent_reader import ( LuminexXponentReader, + MultipleDatasetParser, + SingleDatasetParser, ) from allotropy.parsers.luminex_xponent.luminex_xponent_structure import ( create_calibration, @@ -169,7 +171,7 @@ def test_create_calibration_item_invalid_calibration_result() -> None: def test_create_measurement_list() -> None: - results_data = LuminexXponentReader._get_results(CsvReader(get_result_lines())) + results_data = MultipleDatasetParser._get_results(CsvReader(get_result_lines())) # Create a mock header_data DataFrame for testing mock_header_data = pd.DataFrame.from_dict( @@ -318,3 +320,119 @@ def test_create_measurement_list_without_required_table_then_raise( ): header_row = SeriesData(mock_header_data.iloc[0]) MeasurementList.create(results_data, header_row) + + +class TestSingleDatasetParser: + header_prefix = "INSTRUMENT TYPE,SERIAL NUMBER,SOFTWARE VERSION,PLATE NAME,PLATE START,WELL LOCATION,SAMPLE ID" + row_prefix = "LX200,SN-1,3.1.0,Plate-1,2024-01-01 10:00:00,A1,S1" + + def test_parse_header_splits_analyte_and_metric(self) -> None: + analyte, metric = SingleDatasetParser.parse_header("REPORTER 1 AVERAGE MFI") # type: ignore[misc] + assert analyte == "REPORTER 1" + assert metric == "AVERAGE MFI" + + analyte2, metric2 = SingleDatasetParser.parse_header("R42 TRIMMED STANDARD DEVIATION") # type: ignore[misc] + assert analyte2 == "R42" + assert metric2 == "TRIMMED STANDARD DEVIATION" + + def test_parse_header_returns_none_for_unknown_metric(self) -> None: + assert SingleDatasetParser.parse_header("Alpha UnknownMetric") is None + + def test_parse_builds_results_and_units_and_dilution(self) -> None: + # Minimal single-dataset CSV lines + lines = [ + f"{self.header_prefix},alpha Median,alpha Count,bravo Median,bravo Count", + f"{self.row_prefix},100.5,30,200.0,50", + ] + + results, header, calibration, min_beads = SingleDatasetParser.parse(lines) + + # Expected sections + assert "Median" in results + assert "Count" in results + assert "Units" in results + assert "Dilution Factor" in results + + # Verify Count section totals and columns + count_df = results["Count"] + assert "Total Events" in count_df.columns + # Index should be location-based + assert "1(1,A1)" in count_df.index + # Sample column present + assert count_df.loc["1(1,A1)", "Sample"] == "S1" + # Analyte columns exist + assert "alpha" in count_df.columns and "bravo" in count_df.columns + + # Verify Median section values present for analytes + median_df = results["Median"] + assert float(median_df.loc["1(1,A1)", "alpha"]) == 100.5 # type: ignore[arg-type] + assert float(median_df.loc["1(1,A1)", "bravo"]) == 200.0 # type: ignore[arg-type] + + # Basic checks on Units and Dilution Factor tables + units_df = results["Units"] + assert "alpha" in units_df.columns and "bravo" in units_df.columns + assert "Units:" in units_df.index + + dilution_df = results["Dilution Factor"] + assert "Dilution Factor" in dilution_df.columns + + def test_parse_preserves_units_and_dilution_factor_from_input(self) -> None: + # Input explicitly contains per-analyte Units and Dilution Factor metrics + lines = [ + f"{self.header_prefix},alpha COUNT,bravo COUNT, alpha UNITS,bravo UNITS,alpha DILUTION FACTOR,bravo DILUTION FACTOR", + f"{self.row_prefix},1.0,2.0,3.0,4.0,5.0,6.0", + ] + + results, header, calibration, min_beads = SingleDatasetParser.parse(lines) + + # Sections detected from input + assert "Units" in results + assert "Dilution Factor" in results + + # Values preserved from input in the corresponding sections + units_df = results["Units"] + assert float(units_df.loc["BeadID:", "alpha"]) == 3.0 # type: ignore[arg-type] + assert float(units_df.loc["BeadID:", "bravo"]) == 4.0 # type: ignore[arg-type] + + dilution_df = results["Dilution Factor"] + assert float(dilution_df.loc["1(1,A1)", "alpha"]) == 5.0 # type: ignore[arg-type] + assert float(dilution_df.loc["1(1,A1)", "bravo"]) == 6.0 # type: ignore[arg-type] + + def test_header_contains_serial_and_plate_start(self) -> None: + # Minimal input with only the fixed columns + lines = [ + f"{self.header_prefix}", + f"{self.row_prefix}", + ] + + _results, header, _calibration, _min_beads = SingleDatasetParser.parse(lines) + + # Values should be propagated into the header table + assert header["SN"].iloc[0] == "SN-1" + assert header["BatchStartTime"].iloc[0] == "2024-01-01 10:00:00" + + def test_is_single_dataset_true_with_expected_header_line(self) -> None: + lines = [ + "INSTRUMENT TYPE,SERIAL NUMBER,SOFTWARE VERSION,PLATE NAME,PLATE START,WELL LOCATION,SAMPLE ID,Analyte 1 Median", + "LX200,1234,3.1.0,PlateA,2024-01-01,A1,Sample-1,100", + ] + assert LuminexXponentReader._is_single_dataset(lines) is True + + def test_is_single_dataset_false_missing_one_keyword(self) -> None: + # Missing "SAMPLE ID" + lines = [ + "INSTRUMENT TYPE,SERIAL NUMBER,SOFTWARE VERSION,PLATE NAME,PLATE START,WELL LOCATION,Analyte 1 Median", + "LX200,1234,3.1.0,PlateA,2024-01-01,A1,100", + ] + assert LuminexXponentReader._is_single_dataset(lines) is False + + def test_is_single_dataset_false_empty_input(self) -> None: + assert LuminexXponentReader._is_single_dataset(["RANDOM TEXT"]) is False + + def test_is_single_dataset_true_ignores_rest_of_line_content(self) -> None: + # Extra columns should be ignored as detection is substring-based + lines = [ + "random prefix,INSTRUMENT TYPE,foo,WELL LOCATION,bar,SAMPLE ID,baz", + "", + ] + assert LuminexXponentReader._is_single_dataset(lines) is True From 2e0f0d15499bd0d6f7b27243fde8395989dfee9e Mon Sep 17 00:00:00 2001 From: Felipe Narvaez Date: Tue, 26 Aug 2025 11:58:16 -0500 Subject: [PATCH 2/5] Modified IDs and some data in test file --- .../luminex_intelliflex_single_dataset.csv | 28 +++++++++---------- .../luminex_intelliflex_single_dataset.json | 26 ++++++++--------- 2 files changed, 27 insertions(+), 27 deletions(-) diff --git a/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.csv b/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.csv index a109099c20..506eb8aa50 100644 --- a/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.csv +++ b/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.csv @@ -1,14 +1,14 @@ -INSTRUMENT TYPE,SERIAL NUMBER,SOFTWARE VERSION,PLATE NAME,PLATE START,WELL LOCATION,SAMPLE ID,R25: RP1 MEDIAN,R25: RP1 COUNT,R25: RP1 AVERAGE MFI,R25: RP2 MEDIAN,R25: RP2 COUNT,R25: RP2 AVERAGE MFI,R27: RP1 MEDIAN,R27: RP1 COUNT,R27: RP1 AVERAGE MFI,R27: RP2 MEDIAN,R27: RP2 COUNT,R27: RP2 AVERAGE MFI,R29: RP1 MEDIAN,R29: RP1 COUNT,R29: RP1 AVERAGE MFI,R29: RP2 MEDIAN,R29: RP2 COUNT,R29: RP2 AVERAGE MFI,R42: RP1 MEDIAN,R42: RP1 COUNT,R42: RP1 AVERAGE MFI,R42: RP2 MEDIAN,R42: RP2 COUNT,R42: RP2 AVERAGE MFI,R44: RP1 MEDIAN,R44: RP1 COUNT,R44: RP1 AVERAGE MFI,R44: RP2 MEDIAN,R44: RP2 COUNT,R44: RP2 AVERAGE MFI,R46: RP1 MEDIAN,R46: RP1 COUNT,R46: RP1 AVERAGE MFI,R46: RP2 MEDIAN,R46: RP2 COUNT,R46: RP2 AVERAGE MFI,R48: RP1 MEDIAN,R48: RP1 COUNT,R48: RP1 AVERAGE MFI,R48: RP2 MEDIAN,R48: RP2 COUNT,R48: RP2 AVERAGE MFI,R61: RP1 MEDIAN,R61: RP1 COUNT,R61: RP1 AVERAGE MFI,R61: RP2 MEDIAN,R61: RP2 COUNT,R61: RP2 AVERAGE MFI,R63: RP1 MEDIAN,R63: RP1 COUNT,R63: RP1 AVERAGE MFI,R63: RP2 MEDIAN,R63: RP2 COUNT,R63: RP2 AVERAGE MFI,R65: RP1 MEDIAN,R65: RP1 COUNT,R65: RP1 AVERAGE MFI,R65: RP2 MEDIAN,R65: RP2 COUNT,R65: RP2 AVERAGE MFI,R67: RP1 MEDIAN,R67: RP1 COUNT,R67: RP1 AVERAGE MFI,R67: RP2 MEDIAN,R67: RP2 COUNT,R67: RP2 AVERAGE MFI,R72: RP1 MEDIAN,R72: RP1 COUNT,R72: RP1 AVERAGE MFI,R72: RP2 MEDIAN,R72: RP2 COUNT,R72: RP2 AVERAGE MFI,R74: RP1 MEDIAN,R74: RP1 COUNT,R74: RP1 AVERAGE MFI,R74: RP2 MEDIAN,R74: RP2 COUNT,R74: RP2 AVERAGE MFI,R77: RP1 MEDIAN,R77: RP1 COUNT,R77: RP1 AVERAGE MFI,R77: RP2 MEDIAN,R77: RP2 COUNT,R77: RP2 AVERAGE MFI, -INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,2024-11-08 12:12:17 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PM,E1,Unknown49,131.63574,36,131.63574,9.06152,36,9.06152,105.72461,61,105.72461,6.45313,61,6.45313,123.92773,43,123.92773,6.69922,43,6.69922,114.93164,41,114.93164,8.49023,41,8.49023,130.625,37,130.625,7.06641,37,7.06641,130.24023,26,130.24023,5.40918,26,5.40918,110.51172,40,110.51172,7.40918,40,7.40918,125.45508,44,125.45508,5.79297,44,5.79297,116.75977,43,116.75977,6.8457,43,6.8457,123.11719,38,123.11719,6.00098,38,6.00098,116.76172,39,116.76172,6.625,39,6.625,130.2832,25,130.2832,6.97656,25,6.97656,113.45605,56,113.45605,6.34473,56,6.34473,128.5664,43,128.5664,6.71484,43,6.71484, -INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,2024-11-08 12:12:17 PM,F1,Unknown61,130.39453,27,130.39453,6.7793,27,6.7793,85.59082,30,85.59082,6.49316,30,6.49316,129.2207,33,129.2207,7.18555,33,7.18555,107.88867,32,107.88867,7.63184,32,7.63184,125.70313,28,125.70313,7.5752,28,7.5752,114.60156,35,114.60156,6.14844,35,6.14844,96.55859,34,96.55859,6.13965,34,6.13965,105.91504,40,105.91504,7.20996,40,7.20996,115.81543,34,115.81543,7.32813,34,7.32813,116.83301,26,116.83301,6.92773,26,6.92773,112.3125,34,112.3125,6.64551,34,6.64551,131.3711,31,131.3711,4.60938,31,4.60938,106.99219,35,106.99219,7.31445,35,7.31445,112.64453,26,112.64453,5.44141,26,5.44141, -INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,2024-11-08 12:12:17 PM,G1,Unknown73,124.39648,25,124.39648,7.83008,25,7.83008,92.66309,32,92.66309,7.13965,32,7.13965,120.92969,29,120.92969,6.56836,29,6.56836,109.81641,30,109.81641,8.69141,30,8.69141,118.01758,34,118.01758,7.02344,34,7.02344,114.2959,32,114.2959,7.18457,32,7.18457,102.63477,38,102.63477,8.31055,38,8.31055,87.4209,30,87.4209,7.9668,30,7.9668,115.31055,27,115.31055,5.95898,27,5.95898,96.33789,25,96.33789,6.24414,25,6.24414,98.18066,34,98.18066,6.32422,34,6.32422,123.20117,29,123.20117,7.74023,29,7.74023,94.29102,26,94.29102,5.89844,26,5.89844,105.43359,28,105.43359,5.79004,28,5.79004, -INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,2024-11-08 12:12:17 PM,H1,Unknown85,121.47266,44,121.47266,7.58496,44,7.58496,94.75781,48,94.75781,7.8916,48,7.8916,117.25098,52,117.25098,7.35156,52,7.35156,92.45508,44,92.45508,8.83789,44,8.83789,109.78418,34,109.78418,7.13184,34,7.13184,101.06055,34,101.06055,6.01465,34,6.01465,90.54688,54,90.54688,6.59766,54,6.59766,71.5957,41,71.5957,6.5293,41,6.5293,98.35254,44,98.35254,6.1416,44,6.1416,89.00977,35,89.00977,5.84766,35,5.84766,87.05273,30,87.05273,6.20508,30,6.20508,119.4541,36,119.4541,4.75977,36,4.75977,80.22656,25,80.22656,6.09766,25,6.09766,92.18848,34,92.18848,7.49316,34,7.49316, -INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,2024-11-08 12:12:17 PM,A2,Unknown2,125.0127,32,125.0127,6.8877,32,6.8877,104.43262,28,104.43262,7.01465,28,7.01465,110.04492,27,110.04492,6.43555,27,6.43555,105.17676,32,105.17676,7.64355,32,7.64355,126.90039,34,126.90039,7.14258,34,7.14258,112.59766,40,112.59766,6.48145,40,6.48145,88.30859,41,88.30859,7.79297,41,7.79297,123.91504,38,123.91504,7.87402,38,7.87402,123.45117,37,123.45117,5.94727,37,5.94727,119.83203,31,119.83203,5.4043,31,5.4043,122.57617,25,122.57617,5.74609,25,5.74609,123.87598,26,123.87598,6.70801,26,6.70801,112.65625,33,112.65625,6.80273,33,6.80273,118.62891,37,118.62891,6.22656,37,6.22656, -INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,2024-11-08 12:12:17 PM,B2,Unknown14,126.45117,25,126.45117,7.82422,25,7.82422,94.04492,35,94.04492,5.86914,35,5.86914,111.41211,41,111.41211,7.62891,41,7.62891,107.32422,29,107.32422,7.0957,29,7.0957,114.05371,46,114.05371,5.83008,46,5.83008,119.07324,38,119.07324,5.47168,38,5.47168,95.68652,52,95.68652,4.95898,52,4.95898,127.4375,33,127.4375,6.73242,33,6.73242,118.17578,37,118.17578,6.04297,37,6.04297,118.58984,31,118.58984,7.56445,31,7.56445,116.19141,50,116.19141,7.14551,50,7.14551,125.38184,26,125.38184,6.49902,26,6.49902,116.98438,38,116.98438,5.57324,38,5.57324,120.99414,37,120.99414,6.83203,37,6.83203, -INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,2024-11-08 12:12:17 PM,C2,Unknown26,132.77734,27,132.77734,6.55859,27,6.55859,112.19043,36,112.19043,7.42188,36,7.42188,121.37891,46,121.37891,7.10938,46,7.10938,101.21289,33,101.21289,7.58203,33,7.58203,121.97266,26,121.97266,7.91309,26,7.91309,120.34961,27,120.34961,6.46875,27,6.46875,107.99609,37,107.99609,6.05273,37,6.05273,127.7832,32,127.7832,6.42871,32,6.42871,122.58594,30,122.58594,6.27051,30,6.27051,120.85938,27,120.85938,8.61719,27,8.61719,129.07617,30,129.07617,7.60254,30,7.60254,141.96777,38,141.96777,6.00879,38,6.00879,125.39551,38,125.39551,5.92188,38,5.92188,121.25391,37,121.25391,7.12305,37,7.12305, -INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,2024-11-08 12:12:17 PM,D2,Unknown38,128.7207,26,128.7207,6.94824,26,6.94824,101.10938,41,101.10938,6.31641,41,6.31641,123.68457,42,123.68457,6.22656,42,6.22656,113.94531,43,113.94531,7.35742,43,7.35742,131.0752,40,131.0752,6.39258,40,6.39258,124.47852,35,124.47852,6.50586,35,6.50586,101.50195,47,101.50195,6.58008,47,6.58008,117.9668,40,117.9668,7.44727,40,7.44727,119.88184,40,119.88184,6.19141,40,6.19141,116.80078,39,116.80078,7.97656,39,7.97656,121.03516,35,121.03516,7.25391,35,7.25391,129.13672,35,129.13672,5.50781,35,5.50781,121.48145,38,121.48145,7.36035,38,7.36035,124.10352,39,124.10352,4.97461,39,4.97461, -INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,2024-11-08 12:12:17 PM,E2,Unknown50,134.18262,46,134.18262,7.10547,46,7.10547,102.55664,43,102.55664,6.66406,43,6.66406,126.6875,35,126.6875,6.98438,35,6.98438,116.95996,38,116.95996,7.88477,38,7.88477,123.03516,35,123.03516,6.82813,35,6.82813,126.12109,36,126.12109,5.7959,36,5.7959,98.33008,49,98.33008,8.16211,49,8.16211,122.75195,51,122.75195,7.02148,51,7.02148,125.58789,33,125.58789,5.93164,33,5.93164,119.26563,47,119.26563,6.9375,47,6.9375,118.83691,36,118.83691,6.9668,36,6.9668,141.56445,25,141.56445,6.22656,25,6.22656,113.82227,44,113.82227,7.21484,44,7.21484,117.31836,33,117.31836,5.62109,33,5.62109, +INSTRUMENT TYPE,SERIAL NUMBER,SOFTWARE VERSION,PLATE NAME,PLATE START,WELL LOCATION,SAMPLE ID,R25: RP1 MEDIAN,R25: RP1 COUNT,R25: RP1 AVERAGE MFI,R25: RP2 MEDIAN,R25: RP2 COUNT,R25: RP2 AVERAGE MFI,R27: RP1 MEDIAN,R27: RP1 COUNT,R27: RP1 AVERAGE MFI,R27: RP2 MEDIAN,R27: RP2 COUNT,R27: RP2 AVERAGE MFI,R29: RP1 MEDIAN,R29: RP1 COUNT,R29: RP1 AVERAGE MFI,R29: RP2 MEDIAN,R29: RP2 COUNT,R29: RP2 AVERAGE MFI,R42: RP1 MEDIAN,R42: RP1 COUNT,R42: RP1 AVERAGE MFI,R42: RP2 MEDIAN,R42: RP2 COUNT,R42: RP2 AVERAGE MFI,R44: RP1 MEDIAN,R44: RP1 COUNT,R44: RP1 AVERAGE MFI,R44: RP2 MEDIAN,R44: RP2 COUNT,R44: RP2 AVERAGE MFI,R46: RP1 MEDIAN,R46: RP1 COUNT,R46: RP1 AVERAGE MFI,R46: RP2 MEDIAN,R46: RP2 COUNT,R46: RP2 AVERAGE MFI,R48: RP1 MEDIAN,R48: RP1 COUNT,R48: RP1 AVERAGE MFI,R48: RP2 MEDIAN,R48: RP2 COUNT,R48: RP2 AVERAGE MFI,R61: RP1 MEDIAN,R61: RP1 COUNT,R61: RP1 AVERAGE MFI,R61: RP2 MEDIAN,R61: RP2 COUNT,R61: RP2 AVERAGE MFI,R63: RP1 MEDIAN,R63: RP1 COUNT,R63: RP1 AVERAGE MFI,R63: RP2 MEDIAN,R63: RP2 COUNT,R63: RP2 AVERAGE MFI,R65: RP1 MEDIAN,R65: RP1 COUNT,R65: RP1 AVERAGE MFI,R65: RP2 MEDIAN,R65: RP2 COUNT,R65: RP2 AVERAGE MFI,R67: RP1 MEDIAN,R67: RP1 COUNT,R67: RP1 AVERAGE MFI,R67: RP2 MEDIAN,R67: RP2 COUNT,R67: RP2 AVERAGE MFI,R72: RP1 MEDIAN,R72: RP1 COUNT,R72: RP1 AVERAGE MFI,R72: RP2 MEDIAN,R72: RP2 COUNT,R72: RP2 AVERAGE MFI,R74: RP1 MEDIAN,R74: RP1 COUNT,R74: RP1 AVERAGE MFI,R74: RP2 MEDIAN,R74: RP2 COUNT,R74: RP2 AVERAGE MFI,R77: RP1 MEDIAN,R77: RP1 COUNT,R77: RP1 AVERAGE MFI,R77: RP2 MEDIAN,R77: RP2 COUNT,R77: RP2 AVERAGE MFI +INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,11/8/2024 12:12,A1,Unknown1,130.55469,28,130.55469,6.69629,28,6.69629,101.68555,43,101.68555,6.28516,43,6.28516,117.87695,45,117.87695,6.27539,45,6.27539,99.15234,37,99.15234,7.0957,37,7.0957,117.19629,32,117.19629,5.87012,32,5.87012,117.51758,31,117.51758,7.52734,31,7.52734,96.92578,37,96.92578,5.60352,37,5.60352,123.01563,32,123.01563,6.33984,32,6.33984,121.04004,38,121.04004,7.25586,38,7.25586,122.23633,33,122.23633,6.91797,33,6.91797,118.92676,38,118.92676,6.91699,38,6.91699,124.41211,27,124.41211,5.98438,27,5.98438,118.2168,47,118.2168,7.49609,47,7.49609,119.7168,43,119.7168,7.9668,43,7.9668 +INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,11/8/2024 12:12,B1,Unknown13,129.34082,30,129.34082,8.27637,30,8.27637,98.7207,31,98.7207,6.09375,31,6.09375,117.69531,27,117.69531,6.64453,27,6.64453,105.50781,33,105.50781,8.84766,33,8.84766,119.65918,30,119.65918,7.29395,30,7.29395,122.50391,25,122.50391,6.38672,25,6.38672,99.77734,35,99.77734,6.52734,35,6.52734,127.06445,27,127.06445,5.57617,27,5.57617,124.65234,29,124.65234,6.69727,29,6.69727,120.28711,37,120.28711,6.76172,37,6.76172,118.68555,39,118.68555,6.75391,39,6.75391,131.11523,41,131.11523,5.0918,41,5.0918,116.93164,42,116.93164,6.58203,42,6.58203,113.65039,38,113.65039,6.49805,38,6.49805 +INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,11/8/2024 12:12,C1,Unknown25,125.48828,33,125.48828,6.93555,33,6.93555,97.64648,29,97.64648,6.48633,29,6.48633,122.93848,44,122.93848,8.65234,44,8.65234,105.80859,34,105.80859,6.125,34,6.125,122.6377,32,122.6377,8.40332,32,8.40332,123.63086,31,123.63086,5.08398,31,5.08398,107.95508,35,107.95508,7.55273,35,7.55273,120.92773,36,120.92773,6.49512,36,6.49512,124.46094,31,124.46094,7.07227,31,7.07227,124.34082,42,124.34082,7.52441,42,7.52441,119.18945,33,119.18945,6.07227,33,6.07227,135.54297,25,135.54297,6.28711,25,6.28711,123,40,123,5.56055,40,5.56055,124.20508,37,124.20508,5.98047,37,5.98047 +INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,11/8/2024 12:12,D1,Unknown37,132.32227,33,132.32227,8.52734,33,8.52734,106.33203,41,106.33203,6.45508,41,6.45508,125.43555,37,125.43555,7.33594,37,7.33594,111.09375,32,111.09375,8.68848,32,8.68848,125.43555,31,125.43555,8.25781,31,8.25781,129.81445,31,129.81445,6.43164,31,6.43164,95.78906,27,95.78906,6.32422,27,6.32422,120.82422,29,120.82422,6.71289,29,6.71289,118.38281,31,118.38281,7.12109,31,7.12109,126.88867,27,126.88867,6.26367,27,6.26367,120.93164,25,120.93164,7.4375,25,7.4375,127.84766,34,127.84766,7.15625,34,7.15625,121.58203,34,121.58203,5.56543,34,5.56543,121.15527,34,121.15527,5.85547,34,5.85547 +INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,11/8/2024 12:12,E1,Unknown49,131.63574,36,131.63574,9.06152,36,9.06152,105.72461,61,105.72461,6.45313,61,6.45313,123.92773,43,123.92773,6.69922,43,6.69922,114.93164,41,114.93164,8.49023,41,8.49023,130.625,37,130.625,7.06641,37,7.06641,130.24023,26,130.24023,5.40918,26,5.40918,110.51172,40,110.51172,7.40918,40,7.40918,125.45508,44,125.45508,5.79297,44,5.79297,116.75977,43,116.75977,6.8457,43,6.8457,123.11719,38,123.11719,6.00098,38,6.00098,116.76172,39,116.76172,6.625,39,6.625,130.2832,25,130.2832,6.97656,25,6.97656,113.45605,56,113.45605,6.34473,56,6.34473,128.5664,43,128.5664,6.71484,43,6.71484 +INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,11/8/2024 12:12,F1,Unknown61,130.39453,27,130.39453,6.7793,27,6.7793,85.59082,30,85.59082,6.49316,30,6.49316,129.2207,33,129.2207,7.18555,33,7.18555,107.88867,32,107.88867,7.63184,32,7.63184,125.70313,28,125.70313,7.5752,28,7.5752,114.60156,35,114.60156,6.14844,35,6.14844,96.55859,34,96.55859,6.13965,34,6.13965,105.91504,40,105.91504,7.20996,40,7.20996,115.81543,34,115.81543,7.32813,34,7.32813,116.83301,26,116.83301,6.92773,26,6.92773,112.3125,34,112.3125,6.64551,34,6.64551,131.3711,31,131.3711,4.60938,31,4.60938,106.99219,35,106.99219,7.31445,35,7.31445,112.64453,26,112.64453,5.44141,26,5.44141 +INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,11/8/2024 12:12,G1,Unknown73,124.39648,25,124.39648,7.83008,25,7.83008,92.66309,32,92.66309,7.13965,32,7.13965,120.92969,29,120.92969,6.56836,29,6.56836,109.81641,30,109.81641,8.69141,30,8.69141,118.01758,34,118.01758,7.02344,34,7.02344,114.2959,32,114.2959,7.18457,32,7.18457,102.63477,38,102.63477,8.31055,38,8.31055,87.4209,30,87.4209,7.9668,30,7.9668,115.31055,27,115.31055,5.95898,27,5.95898,96.33789,25,96.33789,6.24414,25,6.24414,98.18066,34,98.18066,6.32422,34,6.32422,123.20117,29,123.20117,7.74023,29,7.74023,94.29102,26,94.29102,5.89844,26,5.89844,105.43359,28,105.43359,5.79004,28,5.79004 +INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,11/8/2024 12:12,H1,Unknown85,121.47266,44,121.47266,7.58496,44,7.58496,94.75781,48,94.75781,7.8916,48,7.8916,117.25098,52,117.25098,7.35156,52,7.35156,92.45508,44,92.45508,8.83789,44,8.83789,109.78418,34,109.78418,7.13184,34,7.13184,101.06055,34,101.06055,6.01465,34,6.01465,90.54688,54,90.54688,6.59766,54,6.59766,71.5957,41,71.5957,6.5293,41,6.5293,98.35254,44,98.35254,6.1416,44,6.1416,89.00977,35,89.00977,5.84766,35,5.84766,87.05273,30,87.05273,6.20508,30,6.20508,119.4541,36,119.4541,4.75977,36,4.75977,80.22656,25,80.22656,6.09766,25,6.09766,92.18848,34,92.18848,7.49316,34,7.49316 +INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,11/8/2024 12:12,A2,Unknown2,125.0127,32,125.0127,6.8877,32,6.8877,104.43262,28,104.43262,7.01465,28,7.01465,110.04492,27,110.04492,6.43555,27,6.43555,105.17676,32,105.17676,7.64355,32,7.64355,126.90039,34,126.90039,7.14258,34,7.14258,112.59766,40,112.59766,6.48145,40,6.48145,88.30859,41,88.30859,7.79297,41,7.79297,123.91504,38,123.91504,7.87402,38,7.87402,123.45117,37,123.45117,5.94727,37,5.94727,119.83203,31,119.83203,5.4043,31,5.4043,122.57617,25,122.57617,5.74609,25,5.74609,123.87598,26,123.87598,6.70801,26,6.70801,112.65625,33,112.65625,6.80273,33,6.80273,118.62891,37,118.62891,6.22656,37,6.22656 +INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,11/8/2024 12:12,B2,Unknown14,126.45117,25,126.45117,7.82422,25,7.82422,94.04492,35,94.04492,5.86914,35,5.86914,111.41211,41,111.41211,7.62891,41,7.62891,107.32422,29,107.32422,7.0957,29,7.0957,114.05371,46,114.05371,5.83008,46,5.83008,119.07324,38,119.07324,5.47168,38,5.47168,95.68652,52,95.68652,4.95898,52,4.95898,127.4375,33,127.4375,6.73242,33,6.73242,118.17578,37,118.17578,6.04297,37,6.04297,118.58984,31,118.58984,7.56445,31,7.56445,116.19141,50,116.19141,7.14551,50,7.14551,125.38184,26,125.38184,6.49902,26,6.49902,116.98438,38,116.98438,5.57324,38,5.57324,120.99414,37,120.99414,6.83203,37,6.83203 +INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,11/8/2024 12:12,C2,Unknown26,132.77734,27,132.77734,6.55859,27,6.55859,112.19043,36,112.19043,7.42188,36,7.42188,121.37891,46,121.37891,7.10938,46,7.10938,101.21289,33,101.21289,7.58203,33,7.58203,121.97266,26,121.97266,7.91309,26,7.91309,120.34961,27,120.34961,6.46875,27,6.46875,107.99609,37,107.99609,6.05273,37,6.05273,127.7832,32,127.7832,6.42871,32,6.42871,122.58594,30,122.58594,6.27051,30,6.27051,120.85938,27,120.85938,8.61719,27,8.61719,129.07617,30,129.07617,7.60254,30,7.60254,141.96777,38,141.96777,6.00879,38,6.00879,125.39551,38,125.39551,5.92188,38,5.92188,121.25391,37,121.25391,7.12305,37,7.12305 +INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,11/8/2024 12:12,D2,Unknown38,128.7207,26,128.7207,6.94824,26,6.94824,101.10938,41,101.10938,6.31641,41,6.31641,123.68457,42,123.68457,6.22656,42,6.22656,113.94531,43,113.94531,7.35742,43,7.35742,131.0752,40,131.0752,6.39258,40,6.39258,124.47852,35,124.47852,6.50586,35,6.50586,101.50195,47,101.50195,6.58008,47,6.58008,117.9668,40,117.9668,7.44727,40,7.44727,119.88184,40,119.88184,6.19141,40,6.19141,116.80078,39,116.80078,7.97656,39,7.97656,121.03516,35,121.03516,7.25391,35,7.25391,129.13672,35,129.13672,5.50781,35,5.50781,121.48145,38,121.48145,7.36035,38,7.36035,124.10352,39,124.10352,4.97461,39,4.97461 +INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,11/8/2024 12:12,E2,Unknown50,134.18262,46,134.18262,7.10547,46,7.10547,102.55664,43,102.55664,6.66406,43,6.66406,126.6875,35,126.6875,6.98438,35,6.98438,116.95996,38,116.95996,7.88477,38,7.88477,123.03516,35,123.03516,6.82813,35,6.82813,126.12109,36,126.12109,5.7959,36,5.7959,98.33008,49,98.33008,8.16211,49,8.16211,122.75195,51,122.75195,7.02148,51,7.02148,125.58789,33,125.58789,5.93164,33,5.93164,119.26563,47,119.26563,6.9375,47,6.9375,118.83691,36,118.83691,6.9668,36,6.9668,141.56445,25,141.56445,6.22656,25,6.22656,113.82227,44,113.82227,7.21484,44,7.21484,117.31836,33,117.31836,5.62109,33,5.62109 diff --git a/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.json b/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.json index 538ba27e30..cc5f3a0f30 100644 --- a/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.json +++ b/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.json @@ -18,7 +18,7 @@ ] }, "measurement identifier": "LUMINEX_INTELLIFLEX_TEST_ID_0", - "measurement time": "2024-11-08T12:12:17+00:00", + "measurement time": "2024-11-08T12:12:00+00:00", "sample document": { "sample identifier": "Unknown1", "location identifier": "A1" @@ -932,7 +932,7 @@ ] }, "measurement identifier": "LUMINEX_INTELLIFLEX_TEST_ID_57", - "measurement time": "2024-11-08T12:12:17+00:00", + "measurement time": "2024-11-08T12:12:00+00:00", "sample document": { "sample identifier": "Unknown13", "location identifier": "B1" @@ -1846,7 +1846,7 @@ ] }, "measurement identifier": "LUMINEX_INTELLIFLEX_TEST_ID_114", - "measurement time": "2024-11-08T12:12:17+00:00", + "measurement time": "2024-11-08T12:12:00+00:00", "sample document": { "sample identifier": "Unknown25", "location identifier": "C1" @@ -2760,7 +2760,7 @@ ] }, "measurement identifier": "LUMINEX_INTELLIFLEX_TEST_ID_171", - "measurement time": "2024-11-08T12:12:17+00:00", + "measurement time": "2024-11-08T12:12:00+00:00", "sample document": { "sample identifier": "Unknown37", "location identifier": "D1" @@ -3674,7 +3674,7 @@ ] }, "measurement identifier": "LUMINEX_INTELLIFLEX_TEST_ID_228", - "measurement time": "2024-11-08T12:12:17+00:00", + "measurement time": "2024-11-08T12:12:00+00:00", "sample document": { "sample identifier": "Unknown49", "location identifier": "E1" @@ -4588,7 +4588,7 @@ ] }, "measurement identifier": "LUMINEX_INTELLIFLEX_TEST_ID_285", - "measurement time": "2024-11-08T12:12:17+00:00", + "measurement time": "2024-11-08T12:12:00+00:00", "sample document": { "sample identifier": "Unknown61", "location identifier": "F1" @@ -5502,7 +5502,7 @@ ] }, "measurement identifier": "LUMINEX_INTELLIFLEX_TEST_ID_342", - "measurement time": "2024-11-08T12:12:17+00:00", + "measurement time": "2024-11-08T12:12:00+00:00", "sample document": { "sample identifier": "Unknown73", "location identifier": "G1" @@ -6416,7 +6416,7 @@ ] }, "measurement identifier": "LUMINEX_INTELLIFLEX_TEST_ID_399", - "measurement time": "2024-11-08T12:12:17+00:00", + "measurement time": "2024-11-08T12:12:00+00:00", "sample document": { "sample identifier": "Unknown85", "location identifier": "H1" @@ -7330,7 +7330,7 @@ ] }, "measurement identifier": "LUMINEX_INTELLIFLEX_TEST_ID_456", - "measurement time": "2024-11-08T12:12:17+00:00", + "measurement time": "2024-11-08T12:12:00+00:00", "sample document": { "sample identifier": "Unknown2", "location identifier": "A2" @@ -8244,7 +8244,7 @@ ] }, "measurement identifier": "LUMINEX_INTELLIFLEX_TEST_ID_513", - "measurement time": "2024-11-08T12:12:17+00:00", + "measurement time": "2024-11-08T12:12:00+00:00", "sample document": { "sample identifier": "Unknown14", "location identifier": "B2" @@ -9158,7 +9158,7 @@ ] }, "measurement identifier": "LUMINEX_INTELLIFLEX_TEST_ID_570", - "measurement time": "2024-11-08T12:12:17+00:00", + "measurement time": "2024-11-08T12:12:00+00:00", "sample document": { "sample identifier": "Unknown26", "location identifier": "C2" @@ -10072,7 +10072,7 @@ ] }, "measurement identifier": "LUMINEX_INTELLIFLEX_TEST_ID_627", - "measurement time": "2024-11-08T12:12:17+00:00", + "measurement time": "2024-11-08T12:12:00+00:00", "sample document": { "sample identifier": "Unknown38", "location identifier": "D2" @@ -10986,7 +10986,7 @@ ] }, "measurement identifier": "LUMINEX_INTELLIFLEX_TEST_ID_684", - "measurement time": "2024-11-08T12:12:17+00:00", + "measurement time": "2024-11-08T12:12:00+00:00", "sample document": { "sample identifier": "Unknown50", "location identifier": "E2" From ef95d83f4f13f8046d34230eae32899372494126 Mon Sep 17 00:00:00 2001 From: Felipe Narvaez Date: Wed, 27 Aug 2025 13:21:48 -0500 Subject: [PATCH 3/5] Added well count and removed errors from missing assay bed ids --- .../luminex_xponent/luminex_xponent_reader.py | 14 +- .../luminex_xponent_structure.py | 11 +- .../luminex_intelliflex_single_dataset.json | 2290 +++-------------- 3 files changed, 432 insertions(+), 1883 deletions(-) diff --git a/src/allotropy/parsers/luminex_xponent/luminex_xponent_reader.py b/src/allotropy/parsers/luminex_xponent/luminex_xponent_reader.py index 67af63fb5b..b79e86aa03 100644 --- a/src/allotropy/parsers/luminex_xponent/luminex_xponent_reader.py +++ b/src/allotropy/parsers/luminex_xponent/luminex_xponent_reader.py @@ -8,6 +8,7 @@ from allotropy.exceptions import AllotropeConversionError, AllotropeParsingError from allotropy.named_file_contents import NamedFileContents +from allotropy.parsers.constants import round_to_nearest_well_count from allotropy.parsers.lines_reader import CsvReader, read_to_lines from allotropy.parsers.luminex_xponent import constants from allotropy.parsers.utils.pandas import read_csv @@ -222,6 +223,17 @@ def add_mandatory_columns( ) results["Units"] = units_df + @staticmethod + def _get_well_count(df: pd.DataFrame) -> int: + # Count unique values in WELL LOCATION matching Excel-like cell ids: Letter(s) + Number(s) + # Example matches: A1, B12, AA3 + pattern = r"^[A-Za-z]+\d+$" + values = df["WELL LOCATION"].astype(str).str.strip() + matching = values[values.str.match(pattern)] + unique_count = int(matching.str.upper().nunique()) + nearest = round_to_nearest_well_count(unique_count) + return int(nearest or 0) + @classmethod def parse( cls, lines: list[str] @@ -295,7 +307,7 @@ def parse( ], 2: ["", "", "", "", "", "", ""], 3: ["", "", "", "", "", "", ""], - 4: ["", "", "", "", "", "", ""], + 4: ["", "", "", "", cls._get_well_count(df), "", ""], 5: ["", "", "", "", "", "", ""], } ) diff --git a/src/allotropy/parsers/luminex_xponent/luminex_xponent_structure.py b/src/allotropy/parsers/luminex_xponent/luminex_xponent_structure.py index f3165f437a..5452df4f2d 100644 --- a/src/allotropy/parsers/luminex_xponent/luminex_xponent_structure.py +++ b/src/allotropy/parsers/luminex_xponent/luminex_xponent_structure.py @@ -138,8 +138,7 @@ def _get_plate_well_count(cls, header_data: pd.DataFrame) -> float: msg = "Unable to find plate well count in ProtocolPlate row, expected value at index 3." raise AllotropeConversionError(msg) from e - plate_well_count = try_non_nan_float_or_none(str(plate_well_count)) - return plate_well_count or -0.0 + return try_float(str(plate_well_count), "plate well count") def create_calibration(calibration_data: SeriesData) -> Calibration: @@ -274,13 +273,7 @@ def get_statistic_dimensions(analyte: str) -> list[StatisticDimension]: key for key in count_data.series.index if key not in metadata_keys ] for analyte in analyte_keys: - assay_bead_identifier = bead_ids_data.get(str, analyte, "") - if not assay_bead_identifier: - errors.append( - Error( - error="Not reported", feature=f"{analyte} assay bead identifier" - ) - ) + assay_bead_identifier = bead_ids_data.get(str, analyte, "N/A") analytes.append( Analyte( identifier=(analyte_identifier := random_uuid_str()), diff --git a/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.json b/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.json index cc5f3a0f30..a309207312 100644 --- a/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.json +++ b/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.json @@ -28,118 +28,6 @@ { "error": "Not reported in file", "error feature": "dilution factor setting" - }, - { - "error": "Not reported", - "error feature": "R25: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R25: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP2 assay bead identifier" } ] }, @@ -152,7 +40,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_1", "analyte name": "R25: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 28.0, "unit": "#" @@ -179,7 +67,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_3", "analyte name": "R25: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 28.0, "unit": "#" @@ -206,7 +94,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_5", "analyte name": "R27: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 43.0, "unit": "#" @@ -233,7 +121,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_7", "analyte name": "R27: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 43.0, "unit": "#" @@ -260,7 +148,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_9", "analyte name": "R29: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 45.0, "unit": "#" @@ -287,7 +175,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_11", "analyte name": "R29: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 45.0, "unit": "#" @@ -314,7 +202,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_13", "analyte name": "R42: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -341,7 +229,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_15", "analyte name": "R42: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -368,7 +256,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_17", "analyte name": "R44: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 32.0, "unit": "#" @@ -395,7 +283,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_19", "analyte name": "R44: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 32.0, "unit": "#" @@ -422,7 +310,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_21", "analyte name": "R46: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 31.0, "unit": "#" @@ -449,7 +337,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_23", "analyte name": "R46: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 31.0, "unit": "#" @@ -476,7 +364,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_25", "analyte name": "R48: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -503,7 +391,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_27", "analyte name": "R48: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -530,7 +418,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_29", "analyte name": "R61: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 32.0, "unit": "#" @@ -557,7 +445,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_31", "analyte name": "R61: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 32.0, "unit": "#" @@ -584,7 +472,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_33", "analyte name": "R63: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -611,7 +499,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_35", "analyte name": "R63: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -638,7 +526,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_37", "analyte name": "R65: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -665,7 +553,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_39", "analyte name": "R65: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -692,7 +580,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_41", "analyte name": "R67: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -719,7 +607,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_43", "analyte name": "R67: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -746,7 +634,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_45", "analyte name": "R72: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -773,7 +661,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_47", "analyte name": "R72: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -800,7 +688,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_49", "analyte name": "R74: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 47.0, "unit": "#" @@ -827,7 +715,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_51", "analyte name": "R74: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 47.0, "unit": "#" @@ -854,7 +742,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_53", "analyte name": "R77: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 43.0, "unit": "#" @@ -881,7 +769,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_55", "analyte name": "R77: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 43.0, "unit": "#" @@ -911,7 +799,7 @@ ], "container type": "well plate", "plate well count": { - "value": -0.0, + "value": 24.0, "unit": "#" } } @@ -942,118 +830,6 @@ { "error": "Not reported in file", "error feature": "dilution factor setting" - }, - { - "error": "Not reported", - "error feature": "R25: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R25: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP2 assay bead identifier" } ] }, @@ -1066,7 +842,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_58", "analyte name": "R25: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 30.0, "unit": "#" @@ -1093,7 +869,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_60", "analyte name": "R25: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 30.0, "unit": "#" @@ -1120,7 +896,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_62", "analyte name": "R27: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 31.0, "unit": "#" @@ -1147,7 +923,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_64", "analyte name": "R27: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 31.0, "unit": "#" @@ -1174,7 +950,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_66", "analyte name": "R29: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -1201,7 +977,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_68", "analyte name": "R29: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -1228,7 +1004,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_70", "analyte name": "R42: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -1255,7 +1031,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_72", "analyte name": "R42: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -1282,7 +1058,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_74", "analyte name": "R44: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 30.0, "unit": "#" @@ -1309,7 +1085,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_76", "analyte name": "R44: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 30.0, "unit": "#" @@ -1336,7 +1112,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_78", "analyte name": "R46: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 25.0, "unit": "#" @@ -1363,7 +1139,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_80", "analyte name": "R46: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 25.0, "unit": "#" @@ -1390,7 +1166,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_82", "analyte name": "R48: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -1417,7 +1193,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_84", "analyte name": "R48: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -1444,7 +1220,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_86", "analyte name": "R61: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -1471,7 +1247,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_88", "analyte name": "R61: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -1498,7 +1274,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_90", "analyte name": "R63: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 29.0, "unit": "#" @@ -1525,7 +1301,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_92", "analyte name": "R63: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 29.0, "unit": "#" @@ -1552,7 +1328,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_94", "analyte name": "R65: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -1579,7 +1355,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_96", "analyte name": "R65: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -1606,7 +1382,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_98", "analyte name": "R67: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 39.0, "unit": "#" @@ -1633,7 +1409,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_100", "analyte name": "R67: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 39.0, "unit": "#" @@ -1660,7 +1436,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_102", "analyte name": "R72: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 41.0, "unit": "#" @@ -1687,7 +1463,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_104", "analyte name": "R72: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 41.0, "unit": "#" @@ -1714,7 +1490,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_106", "analyte name": "R74: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 42.0, "unit": "#" @@ -1741,7 +1517,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_108", "analyte name": "R74: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 42.0, "unit": "#" @@ -1768,7 +1544,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_110", "analyte name": "R77: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -1795,7 +1571,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_112", "analyte name": "R77: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -1825,7 +1601,7 @@ ], "container type": "well plate", "plate well count": { - "value": -0.0, + "value": 24.0, "unit": "#" } } @@ -1856,118 +1632,6 @@ { "error": "Not reported in file", "error feature": "dilution factor setting" - }, - { - "error": "Not reported", - "error feature": "R25: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R25: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP2 assay bead identifier" } ] }, @@ -1980,7 +1644,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_115", "analyte name": "R25: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -2007,7 +1671,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_117", "analyte name": "R25: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -2034,7 +1698,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_119", "analyte name": "R27: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 29.0, "unit": "#" @@ -2061,7 +1725,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_121", "analyte name": "R27: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 29.0, "unit": "#" @@ -2088,7 +1752,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_123", "analyte name": "R29: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 44.0, "unit": "#" @@ -2115,7 +1779,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_125", "analyte name": "R29: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 44.0, "unit": "#" @@ -2142,7 +1806,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_127", "analyte name": "R42: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -2169,7 +1833,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_129", "analyte name": "R42: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -2196,7 +1860,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_131", "analyte name": "R44: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 32.0, "unit": "#" @@ -2223,7 +1887,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_133", "analyte name": "R44: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 32.0, "unit": "#" @@ -2250,7 +1914,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_135", "analyte name": "R46: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 31.0, "unit": "#" @@ -2277,7 +1941,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_137", "analyte name": "R46: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 31.0, "unit": "#" @@ -2304,7 +1968,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_139", "analyte name": "R48: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -2331,7 +1995,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_141", "analyte name": "R48: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -2358,7 +2022,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_143", "analyte name": "R61: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 36.0, "unit": "#" @@ -2385,7 +2049,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_145", "analyte name": "R61: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 36.0, "unit": "#" @@ -2412,7 +2076,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_147", "analyte name": "R63: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 31.0, "unit": "#" @@ -2439,7 +2103,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_149", "analyte name": "R63: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 31.0, "unit": "#" @@ -2466,7 +2130,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_151", "analyte name": "R65: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 42.0, "unit": "#" @@ -2493,7 +2157,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_153", "analyte name": "R65: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 42.0, "unit": "#" @@ -2520,7 +2184,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_155", "analyte name": "R67: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -2547,7 +2211,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_157", "analyte name": "R67: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -2574,7 +2238,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_159", "analyte name": "R72: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 25.0, "unit": "#" @@ -2601,7 +2265,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_161", "analyte name": "R72: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 25.0, "unit": "#" @@ -2628,7 +2292,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_163", "analyte name": "R74: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 40.0, "unit": "#" @@ -2655,7 +2319,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_165", "analyte name": "R74: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 40.0, "unit": "#" @@ -2682,7 +2346,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_167", "analyte name": "R77: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -2709,7 +2373,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_169", "analyte name": "R77: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -2739,7 +2403,7 @@ ], "container type": "well plate", "plate well count": { - "value": -0.0, + "value": 24.0, "unit": "#" } } @@ -2770,118 +2434,6 @@ { "error": "Not reported in file", "error feature": "dilution factor setting" - }, - { - "error": "Not reported", - "error feature": "R25: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R25: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP2 assay bead identifier" } ] }, @@ -2894,7 +2446,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_172", "analyte name": "R25: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -2921,7 +2473,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_174", "analyte name": "R25: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -2948,7 +2500,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_176", "analyte name": "R27: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 41.0, "unit": "#" @@ -2975,7 +2527,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_178", "analyte name": "R27: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 41.0, "unit": "#" @@ -3002,7 +2554,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_180", "analyte name": "R29: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -3029,7 +2581,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_182", "analyte name": "R29: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -3056,7 +2608,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_184", "analyte name": "R42: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 32.0, "unit": "#" @@ -3083,7 +2635,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_186", "analyte name": "R42: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 32.0, "unit": "#" @@ -3110,7 +2662,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_188", "analyte name": "R44: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 31.0, "unit": "#" @@ -3137,7 +2689,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_190", "analyte name": "R44: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 31.0, "unit": "#" @@ -3164,7 +2716,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_192", "analyte name": "R46: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 31.0, "unit": "#" @@ -3191,7 +2743,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_194", "analyte name": "R46: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 31.0, "unit": "#" @@ -3218,7 +2770,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_196", "analyte name": "R48: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -3245,7 +2797,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_198", "analyte name": "R48: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -3272,7 +2824,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_200", "analyte name": "R61: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 29.0, "unit": "#" @@ -3299,7 +2851,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_202", "analyte name": "R61: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 29.0, "unit": "#" @@ -3326,7 +2878,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_204", "analyte name": "R63: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 31.0, "unit": "#" @@ -3353,7 +2905,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_206", "analyte name": "R63: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 31.0, "unit": "#" @@ -3380,7 +2932,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_208", "analyte name": "R65: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -3407,7 +2959,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_210", "analyte name": "R65: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -3434,7 +2986,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_212", "analyte name": "R67: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 25.0, "unit": "#" @@ -3461,7 +3013,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_214", "analyte name": "R67: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 25.0, "unit": "#" @@ -3488,7 +3040,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_216", "analyte name": "R72: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -3515,7 +3067,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_218", "analyte name": "R72: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -3542,7 +3094,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_220", "analyte name": "R74: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -3569,7 +3121,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_222", "analyte name": "R74: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -3596,7 +3148,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_224", "analyte name": "R77: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -3623,7 +3175,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_226", "analyte name": "R77: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -3653,7 +3205,7 @@ ], "container type": "well plate", "plate well count": { - "value": -0.0, + "value": 24.0, "unit": "#" } } @@ -3684,131 +3236,19 @@ { "error": "Not reported in file", "error feature": "dilution factor setting" - }, - { - "error": "Not reported", - "error feature": "R25: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R25: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP2 assay bead identifier" - } - ] - }, - "assay bead count": { - "value": 1144.0, - "unit": "#" - }, - "analyte aggregate document": { - "analyte document": [ + } + ] + }, + "assay bead count": { + "value": 1144.0, + "unit": "#" + }, + "analyte aggregate document": { + "analyte document": [ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_229", "analyte name": "R25: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 36.0, "unit": "#" @@ -3835,7 +3275,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_231", "analyte name": "R25: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 36.0, "unit": "#" @@ -3862,7 +3302,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_233", "analyte name": "R27: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 61.0, "unit": "#" @@ -3889,7 +3329,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_235", "analyte name": "R27: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 61.0, "unit": "#" @@ -3916,7 +3356,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_237", "analyte name": "R29: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 43.0, "unit": "#" @@ -3943,7 +3383,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_239", "analyte name": "R29: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 43.0, "unit": "#" @@ -3970,7 +3410,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_241", "analyte name": "R42: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 41.0, "unit": "#" @@ -3997,7 +3437,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_243", "analyte name": "R42: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 41.0, "unit": "#" @@ -4024,7 +3464,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_245", "analyte name": "R44: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -4051,7 +3491,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_247", "analyte name": "R44: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -4078,7 +3518,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_249", "analyte name": "R46: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 26.0, "unit": "#" @@ -4105,7 +3545,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_251", "analyte name": "R46: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 26.0, "unit": "#" @@ -4132,7 +3572,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_253", "analyte name": "R48: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 40.0, "unit": "#" @@ -4159,7 +3599,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_255", "analyte name": "R48: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 40.0, "unit": "#" @@ -4186,7 +3626,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_257", "analyte name": "R61: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 44.0, "unit": "#" @@ -4213,7 +3653,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_259", "analyte name": "R61: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 44.0, "unit": "#" @@ -4240,7 +3680,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_261", "analyte name": "R63: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 43.0, "unit": "#" @@ -4267,7 +3707,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_263", "analyte name": "R63: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 43.0, "unit": "#" @@ -4294,7 +3734,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_265", "analyte name": "R65: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -4321,7 +3761,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_267", "analyte name": "R65: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -4348,7 +3788,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_269", "analyte name": "R67: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 39.0, "unit": "#" @@ -4375,7 +3815,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_271", "analyte name": "R67: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 39.0, "unit": "#" @@ -4402,7 +3842,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_273", "analyte name": "R72: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 25.0, "unit": "#" @@ -4429,7 +3869,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_275", "analyte name": "R72: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 25.0, "unit": "#" @@ -4456,7 +3896,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_277", "analyte name": "R74: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 56.0, "unit": "#" @@ -4483,7 +3923,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_279", "analyte name": "R74: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 56.0, "unit": "#" @@ -4510,7 +3950,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_281", "analyte name": "R77: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 43.0, "unit": "#" @@ -4537,7 +3977,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_283", "analyte name": "R77: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 43.0, "unit": "#" @@ -4567,7 +4007,7 @@ ], "container type": "well plate", "plate well count": { - "value": -0.0, + "value": 24.0, "unit": "#" } } @@ -4598,118 +4038,6 @@ { "error": "Not reported in file", "error feature": "dilution factor setting" - }, - { - "error": "Not reported", - "error feature": "R25: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R25: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP2 assay bead identifier" } ] }, @@ -4722,7 +4050,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_286", "analyte name": "R25: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -4749,7 +4077,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_288", "analyte name": "R25: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -4776,7 +4104,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_290", "analyte name": "R27: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 30.0, "unit": "#" @@ -4803,7 +4131,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_292", "analyte name": "R27: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 30.0, "unit": "#" @@ -4830,7 +4158,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_294", "analyte name": "R29: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -4857,7 +4185,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_296", "analyte name": "R29: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -4884,7 +4212,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_298", "analyte name": "R42: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 32.0, "unit": "#" @@ -4911,7 +4239,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_300", "analyte name": "R42: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 32.0, "unit": "#" @@ -4938,7 +4266,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_302", "analyte name": "R44: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 28.0, "unit": "#" @@ -4965,7 +4293,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_304", "analyte name": "R44: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 28.0, "unit": "#" @@ -4992,7 +4320,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_306", "analyte name": "R46: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -5019,7 +4347,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_308", "analyte name": "R46: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -5046,7 +4374,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_310", "analyte name": "R48: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -5073,7 +4401,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_312", "analyte name": "R48: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -5100,7 +4428,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_314", "analyte name": "R61: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 40.0, "unit": "#" @@ -5127,7 +4455,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_316", "analyte name": "R61: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 40.0, "unit": "#" @@ -5154,7 +4482,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_318", "analyte name": "R63: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -5181,7 +4509,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_320", "analyte name": "R63: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -5208,7 +4536,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_322", "analyte name": "R65: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 26.0, "unit": "#" @@ -5235,7 +4563,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_324", "analyte name": "R65: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 26.0, "unit": "#" @@ -5262,7 +4590,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_326", "analyte name": "R67: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -5289,7 +4617,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_328", "analyte name": "R67: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -5316,7 +4644,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_330", "analyte name": "R72: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 31.0, "unit": "#" @@ -5343,7 +4671,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_332", "analyte name": "R72: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 31.0, "unit": "#" @@ -5370,7 +4698,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_334", "analyte name": "R74: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -5397,7 +4725,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_336", "analyte name": "R74: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -5424,7 +4752,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_338", "analyte name": "R77: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 26.0, "unit": "#" @@ -5451,7 +4779,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_340", "analyte name": "R77: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 26.0, "unit": "#" @@ -5481,7 +4809,7 @@ ], "container type": "well plate", "plate well count": { - "value": -0.0, + "value": 24.0, "unit": "#" } } @@ -5512,118 +4840,6 @@ { "error": "Not reported in file", "error feature": "dilution factor setting" - }, - { - "error": "Not reported", - "error feature": "R25: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R25: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP2 assay bead identifier" } ] }, @@ -5636,7 +4852,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_343", "analyte name": "R25: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 25.0, "unit": "#" @@ -5663,7 +4879,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_345", "analyte name": "R25: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 25.0, "unit": "#" @@ -5690,7 +4906,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_347", "analyte name": "R27: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 32.0, "unit": "#" @@ -5717,7 +4933,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_349", "analyte name": "R27: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 32.0, "unit": "#" @@ -5744,7 +4960,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_351", "analyte name": "R29: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 29.0, "unit": "#" @@ -5771,7 +4987,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_353", "analyte name": "R29: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 29.0, "unit": "#" @@ -5798,7 +5014,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_355", "analyte name": "R42: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 30.0, "unit": "#" @@ -5825,7 +5041,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_357", "analyte name": "R42: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 30.0, "unit": "#" @@ -5852,7 +5068,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_359", "analyte name": "R44: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -5879,7 +5095,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_361", "analyte name": "R44: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -5906,7 +5122,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_363", "analyte name": "R46: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 32.0, "unit": "#" @@ -5933,7 +5149,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_365", "analyte name": "R46: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 32.0, "unit": "#" @@ -5960,7 +5176,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_367", "analyte name": "R48: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -5987,7 +5203,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_369", "analyte name": "R48: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -6014,7 +5230,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_371", "analyte name": "R61: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 30.0, "unit": "#" @@ -6041,7 +5257,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_373", "analyte name": "R61: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 30.0, "unit": "#" @@ -6068,7 +5284,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_375", "analyte name": "R63: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -6095,7 +5311,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_377", "analyte name": "R63: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -6122,7 +5338,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_379", "analyte name": "R65: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 25.0, "unit": "#" @@ -6149,7 +5365,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_381", "analyte name": "R65: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 25.0, "unit": "#" @@ -6176,7 +5392,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_383", "analyte name": "R67: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -6203,7 +5419,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_385", "analyte name": "R67: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -6230,7 +5446,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_387", "analyte name": "R72: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 29.0, "unit": "#" @@ -6257,7 +5473,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_389", "analyte name": "R72: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 29.0, "unit": "#" @@ -6284,7 +5500,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_391", "analyte name": "R74: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 26.0, "unit": "#" @@ -6311,7 +5527,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_393", "analyte name": "R74: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 26.0, "unit": "#" @@ -6338,7 +5554,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_395", "analyte name": "R77: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 28.0, "unit": "#" @@ -6365,7 +5581,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_397", "analyte name": "R77: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 28.0, "unit": "#" @@ -6395,7 +5611,7 @@ ], "container type": "well plate", "plate well count": { - "value": -0.0, + "value": 24.0, "unit": "#" } } @@ -6426,118 +5642,6 @@ { "error": "Not reported in file", "error feature": "dilution factor setting" - }, - { - "error": "Not reported", - "error feature": "R25: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R25: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP2 assay bead identifier" } ] }, @@ -6550,7 +5654,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_400", "analyte name": "R25: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 44.0, "unit": "#" @@ -6577,7 +5681,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_402", "analyte name": "R25: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 44.0, "unit": "#" @@ -6604,7 +5708,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_404", "analyte name": "R27: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 48.0, "unit": "#" @@ -6631,7 +5735,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_406", "analyte name": "R27: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 48.0, "unit": "#" @@ -6658,7 +5762,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_408", "analyte name": "R29: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 52.0, "unit": "#" @@ -6685,7 +5789,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_410", "analyte name": "R29: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 52.0, "unit": "#" @@ -6712,7 +5816,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_412", "analyte name": "R42: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 44.0, "unit": "#" @@ -6739,7 +5843,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_414", "analyte name": "R42: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 44.0, "unit": "#" @@ -6766,7 +5870,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_416", "analyte name": "R44: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -6793,7 +5897,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_418", "analyte name": "R44: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -6820,7 +5924,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_420", "analyte name": "R46: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -6847,7 +5951,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_422", "analyte name": "R46: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -6874,7 +5978,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_424", "analyte name": "R48: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 54.0, "unit": "#" @@ -6901,7 +6005,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_426", "analyte name": "R48: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 54.0, "unit": "#" @@ -6928,7 +6032,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_428", "analyte name": "R61: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 41.0, "unit": "#" @@ -6955,7 +6059,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_430", "analyte name": "R61: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 41.0, "unit": "#" @@ -6982,7 +6086,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_432", "analyte name": "R63: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 44.0, "unit": "#" @@ -7009,7 +6113,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_434", "analyte name": "R63: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 44.0, "unit": "#" @@ -7036,7 +6140,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_436", "analyte name": "R65: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -7063,7 +6167,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_438", "analyte name": "R65: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -7090,7 +6194,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_440", "analyte name": "R67: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 30.0, "unit": "#" @@ -7117,7 +6221,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_442", "analyte name": "R67: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 30.0, "unit": "#" @@ -7144,7 +6248,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_444", "analyte name": "R72: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 36.0, "unit": "#" @@ -7171,7 +6275,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_446", "analyte name": "R72: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 36.0, "unit": "#" @@ -7198,7 +6302,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_448", "analyte name": "R74: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 25.0, "unit": "#" @@ -7225,7 +6329,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_450", "analyte name": "R74: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 25.0, "unit": "#" @@ -7252,7 +6356,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_452", "analyte name": "R77: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -7279,7 +6383,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_454", "analyte name": "R77: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -7306,152 +6410,40 @@ ] } } - ], - "container type": "well plate", - "plate well count": { - "value": -0.0, - "unit": "#" - } - } - }, - { - "measurement aggregate document": { - "measurement document": [ - { - "device control aggregate document": { - "device control document": [ - { - "device type": "multi analyte profiling analyzer", - "dilution factor setting": { - "value": -0.0, - "unit": "(unitless)" - } - } - ] - }, - "measurement identifier": "LUMINEX_INTELLIFLEX_TEST_ID_456", - "measurement time": "2024-11-08T12:12:00+00:00", - "sample document": { - "sample identifier": "Unknown2", - "location identifier": "A2" - }, - "error aggregate document": { - "error document": [ - { - "error": "Not reported in file", - "error feature": "dilution factor setting" - }, - { - "error": "Not reported", - "error feature": "R25: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R25: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP2 assay bead identifier" - }, + ], + "container type": "well plate", + "plate well count": { + "value": 24.0, + "unit": "#" + } + } + }, + { + "measurement aggregate document": { + "measurement document": [ + { + "device control aggregate document": { + "device control document": [ { - "error": "Not reported", - "error feature": "R77: RP1 assay bead identifier" - }, + "device type": "multi analyte profiling analyzer", + "dilution factor setting": { + "value": -0.0, + "unit": "(unitless)" + } + } + ] + }, + "measurement identifier": "LUMINEX_INTELLIFLEX_TEST_ID_456", + "measurement time": "2024-11-08T12:12:00+00:00", + "sample document": { + "sample identifier": "Unknown2", + "location identifier": "A2" + }, + "error aggregate document": { + "error document": [ { - "error": "Not reported", - "error feature": "R77: RP2 assay bead identifier" + "error": "Not reported in file", + "error feature": "dilution factor setting" } ] }, @@ -7464,7 +6456,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_457", "analyte name": "R25: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 32.0, "unit": "#" @@ -7491,7 +6483,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_459", "analyte name": "R25: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 32.0, "unit": "#" @@ -7518,7 +6510,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_461", "analyte name": "R27: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 28.0, "unit": "#" @@ -7545,7 +6537,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_463", "analyte name": "R27: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 28.0, "unit": "#" @@ -7572,7 +6564,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_465", "analyte name": "R29: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -7599,7 +6591,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_467", "analyte name": "R29: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -7626,7 +6618,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_469", "analyte name": "R42: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 32.0, "unit": "#" @@ -7653,7 +6645,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_471", "analyte name": "R42: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 32.0, "unit": "#" @@ -7680,7 +6672,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_473", "analyte name": "R44: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -7707,7 +6699,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_475", "analyte name": "R44: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 34.0, "unit": "#" @@ -7734,7 +6726,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_477", "analyte name": "R46: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 40.0, "unit": "#" @@ -7761,7 +6753,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_479", "analyte name": "R46: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 40.0, "unit": "#" @@ -7788,7 +6780,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_481", "analyte name": "R48: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 41.0, "unit": "#" @@ -7815,7 +6807,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_483", "analyte name": "R48: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 41.0, "unit": "#" @@ -7842,7 +6834,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_485", "analyte name": "R61: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -7869,7 +6861,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_487", "analyte name": "R61: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -7896,7 +6888,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_489", "analyte name": "R63: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -7923,7 +6915,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_491", "analyte name": "R63: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -7950,7 +6942,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_493", "analyte name": "R65: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 31.0, "unit": "#" @@ -7977,7 +6969,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_495", "analyte name": "R65: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 31.0, "unit": "#" @@ -8004,7 +6996,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_497", "analyte name": "R67: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 25.0, "unit": "#" @@ -8031,7 +7023,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_499", "analyte name": "R67: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 25.0, "unit": "#" @@ -8058,7 +7050,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_501", "analyte name": "R72: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 26.0, "unit": "#" @@ -8085,7 +7077,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_503", "analyte name": "R72: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 26.0, "unit": "#" @@ -8112,7 +7104,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_505", "analyte name": "R74: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -8139,7 +7131,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_507", "analyte name": "R74: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -8166,7 +7158,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_509", "analyte name": "R77: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -8193,7 +7185,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_511", "analyte name": "R77: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -8223,7 +7215,7 @@ ], "container type": "well plate", "plate well count": { - "value": -0.0, + "value": 24.0, "unit": "#" } } @@ -8254,118 +7246,6 @@ { "error": "Not reported in file", "error feature": "dilution factor setting" - }, - { - "error": "Not reported", - "error feature": "R25: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R25: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP2 assay bead identifier" } ] }, @@ -8378,7 +7258,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_514", "analyte name": "R25: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 25.0, "unit": "#" @@ -8405,7 +7285,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_516", "analyte name": "R25: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 25.0, "unit": "#" @@ -8432,7 +7312,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_518", "analyte name": "R27: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -8459,7 +7339,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_520", "analyte name": "R27: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -8486,7 +7366,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_522", "analyte name": "R29: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 41.0, "unit": "#" @@ -8513,7 +7393,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_524", "analyte name": "R29: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 41.0, "unit": "#" @@ -8540,7 +7420,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_526", "analyte name": "R42: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 29.0, "unit": "#" @@ -8567,7 +7447,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_528", "analyte name": "R42: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 29.0, "unit": "#" @@ -8594,7 +7474,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_530", "analyte name": "R44: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 46.0, "unit": "#" @@ -8621,7 +7501,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_532", "analyte name": "R44: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 46.0, "unit": "#" @@ -8648,7 +7528,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_534", "analyte name": "R46: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -8675,7 +7555,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_536", "analyte name": "R46: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -8702,7 +7582,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_538", "analyte name": "R48: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 52.0, "unit": "#" @@ -8729,7 +7609,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_540", "analyte name": "R48: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 52.0, "unit": "#" @@ -8756,7 +7636,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_542", "analyte name": "R61: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -8783,7 +7663,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_544", "analyte name": "R61: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -8810,7 +7690,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_546", "analyte name": "R63: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -8837,7 +7717,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_548", "analyte name": "R63: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -8864,7 +7744,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_550", "analyte name": "R65: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 31.0, "unit": "#" @@ -8891,7 +7771,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_552", "analyte name": "R65: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 31.0, "unit": "#" @@ -8918,7 +7798,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_554", "analyte name": "R67: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 50.0, "unit": "#" @@ -8945,7 +7825,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_556", "analyte name": "R67: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 50.0, "unit": "#" @@ -8972,7 +7852,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_558", "analyte name": "R72: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 26.0, "unit": "#" @@ -8999,7 +7879,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_560", "analyte name": "R72: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 26.0, "unit": "#" @@ -9026,7 +7906,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_562", "analyte name": "R74: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -9053,7 +7933,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_564", "analyte name": "R74: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -9080,7 +7960,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_566", "analyte name": "R77: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -9107,7 +7987,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_568", "analyte name": "R77: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -9137,7 +8017,7 @@ ], "container type": "well plate", "plate well count": { - "value": -0.0, + "value": 24.0, "unit": "#" } } @@ -9168,118 +8048,6 @@ { "error": "Not reported in file", "error feature": "dilution factor setting" - }, - { - "error": "Not reported", - "error feature": "R25: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R25: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP2 assay bead identifier" } ] }, @@ -9292,7 +8060,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_571", "analyte name": "R25: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -9319,7 +8087,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_573", "analyte name": "R25: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -9346,7 +8114,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_575", "analyte name": "R27: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 36.0, "unit": "#" @@ -9373,7 +8141,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_577", "analyte name": "R27: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 36.0, "unit": "#" @@ -9400,7 +8168,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_579", "analyte name": "R29: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 46.0, "unit": "#" @@ -9427,7 +8195,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_581", "analyte name": "R29: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 46.0, "unit": "#" @@ -9454,7 +8222,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_583", "analyte name": "R42: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -9481,7 +8249,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_585", "analyte name": "R42: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -9508,7 +8276,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_587", "analyte name": "R44: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 26.0, "unit": "#" @@ -9535,7 +8303,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_589", "analyte name": "R44: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 26.0, "unit": "#" @@ -9562,7 +8330,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_591", "analyte name": "R46: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -9589,7 +8357,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_593", "analyte name": "R46: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -9616,7 +8384,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_595", "analyte name": "R48: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -9643,7 +8411,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_597", "analyte name": "R48: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -9670,7 +8438,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_599", "analyte name": "R61: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 32.0, "unit": "#" @@ -9697,7 +8465,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_601", "analyte name": "R61: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 32.0, "unit": "#" @@ -9724,7 +8492,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_603", "analyte name": "R63: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 30.0, "unit": "#" @@ -9751,7 +8519,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_605", "analyte name": "R63: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 30.0, "unit": "#" @@ -9778,7 +8546,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_607", "analyte name": "R65: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -9805,7 +8573,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_609", "analyte name": "R65: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 27.0, "unit": "#" @@ -9832,7 +8600,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_611", "analyte name": "R67: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 30.0, "unit": "#" @@ -9859,7 +8627,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_613", "analyte name": "R67: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 30.0, "unit": "#" @@ -9886,7 +8654,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_615", "analyte name": "R72: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -9913,7 +8681,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_617", "analyte name": "R72: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -9940,7 +8708,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_619", "analyte name": "R74: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -9967,7 +8735,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_621", "analyte name": "R74: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -9994,7 +8762,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_623", "analyte name": "R77: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -10021,7 +8789,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_625", "analyte name": "R77: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 37.0, "unit": "#" @@ -10051,7 +8819,7 @@ ], "container type": "well plate", "plate well count": { - "value": -0.0, + "value": 24.0, "unit": "#" } } @@ -10082,118 +8850,6 @@ { "error": "Not reported in file", "error feature": "dilution factor setting" - }, - { - "error": "Not reported", - "error feature": "R25: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R25: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP2 assay bead identifier" } ] }, @@ -10206,7 +8862,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_628", "analyte name": "R25: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 26.0, "unit": "#" @@ -10233,7 +8889,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_630", "analyte name": "R25: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 26.0, "unit": "#" @@ -10260,7 +8916,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_632", "analyte name": "R27: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 41.0, "unit": "#" @@ -10287,7 +8943,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_634", "analyte name": "R27: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 41.0, "unit": "#" @@ -10314,7 +8970,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_636", "analyte name": "R29: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 42.0, "unit": "#" @@ -10341,7 +8997,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_638", "analyte name": "R29: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 42.0, "unit": "#" @@ -10368,7 +9024,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_640", "analyte name": "R42: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 43.0, "unit": "#" @@ -10395,7 +9051,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_642", "analyte name": "R42: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 43.0, "unit": "#" @@ -10422,7 +9078,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_644", "analyte name": "R44: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 40.0, "unit": "#" @@ -10449,7 +9105,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_646", "analyte name": "R44: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 40.0, "unit": "#" @@ -10476,7 +9132,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_648", "analyte name": "R46: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -10503,7 +9159,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_650", "analyte name": "R46: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -10530,7 +9186,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_652", "analyte name": "R48: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 47.0, "unit": "#" @@ -10557,7 +9213,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_654", "analyte name": "R48: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 47.0, "unit": "#" @@ -10584,7 +9240,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_656", "analyte name": "R61: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 40.0, "unit": "#" @@ -10611,7 +9267,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_658", "analyte name": "R61: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 40.0, "unit": "#" @@ -10638,7 +9294,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_660", "analyte name": "R63: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 40.0, "unit": "#" @@ -10665,7 +9321,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_662", "analyte name": "R63: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 40.0, "unit": "#" @@ -10692,7 +9348,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_664", "analyte name": "R65: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 39.0, "unit": "#" @@ -10719,7 +9375,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_666", "analyte name": "R65: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 39.0, "unit": "#" @@ -10746,7 +9402,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_668", "analyte name": "R67: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -10773,7 +9429,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_670", "analyte name": "R67: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -10800,7 +9456,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_672", "analyte name": "R72: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -10827,7 +9483,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_674", "analyte name": "R72: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -10854,7 +9510,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_676", "analyte name": "R74: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -10881,7 +9537,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_678", "analyte name": "R74: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -10908,7 +9564,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_680", "analyte name": "R77: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 39.0, "unit": "#" @@ -10935,7 +9591,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_682", "analyte name": "R77: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 39.0, "unit": "#" @@ -10965,7 +9621,7 @@ ], "container type": "well plate", "plate well count": { - "value": -0.0, + "value": 24.0, "unit": "#" } } @@ -10996,118 +9652,6 @@ { "error": "Not reported in file", "error feature": "dilution factor setting" - }, - { - "error": "Not reported", - "error feature": "R25: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R25: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R27: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R29: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R42: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R44: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R46: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R48: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R61: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R63: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R65: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R67: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R72: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R74: RP2 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP1 assay bead identifier" - }, - { - "error": "Not reported", - "error feature": "R77: RP2 assay bead identifier" } ] }, @@ -11120,7 +9664,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_685", "analyte name": "R25: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 46.0, "unit": "#" @@ -11147,7 +9691,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_687", "analyte name": "R25: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 46.0, "unit": "#" @@ -11174,7 +9718,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_689", "analyte name": "R27: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 43.0, "unit": "#" @@ -11201,7 +9745,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_691", "analyte name": "R27: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 43.0, "unit": "#" @@ -11228,7 +9772,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_693", "analyte name": "R29: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -11255,7 +9799,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_695", "analyte name": "R29: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -11282,7 +9826,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_697", "analyte name": "R42: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -11309,7 +9853,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_699", "analyte name": "R42: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 38.0, "unit": "#" @@ -11336,7 +9880,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_701", "analyte name": "R44: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -11363,7 +9907,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_703", "analyte name": "R44: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 35.0, "unit": "#" @@ -11390,7 +9934,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_705", "analyte name": "R46: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 36.0, "unit": "#" @@ -11417,7 +9961,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_707", "analyte name": "R46: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 36.0, "unit": "#" @@ -11444,7 +9988,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_709", "analyte name": "R48: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 49.0, "unit": "#" @@ -11471,7 +10015,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_711", "analyte name": "R48: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 49.0, "unit": "#" @@ -11498,7 +10042,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_713", "analyte name": "R61: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 51.0, "unit": "#" @@ -11525,7 +10069,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_715", "analyte name": "R61: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 51.0, "unit": "#" @@ -11552,7 +10096,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_717", "analyte name": "R63: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -11579,7 +10123,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_719", "analyte name": "R63: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -11606,7 +10150,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_721", "analyte name": "R65: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 47.0, "unit": "#" @@ -11633,7 +10177,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_723", "analyte name": "R65: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 47.0, "unit": "#" @@ -11660,7 +10204,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_725", "analyte name": "R67: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 36.0, "unit": "#" @@ -11687,7 +10231,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_727", "analyte name": "R67: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 36.0, "unit": "#" @@ -11714,7 +10258,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_729", "analyte name": "R72: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 25.0, "unit": "#" @@ -11741,7 +10285,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_731", "analyte name": "R72: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 25.0, "unit": "#" @@ -11768,7 +10312,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_733", "analyte name": "R74: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 44.0, "unit": "#" @@ -11795,7 +10339,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_735", "analyte name": "R74: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 44.0, "unit": "#" @@ -11822,7 +10366,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_737", "analyte name": "R77: RP1", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -11849,7 +10393,7 @@ { "analyte identifier": "LUMINEX_INTELLIFLEX_TEST_ID_739", "analyte name": "R77: RP2", - "assay bead identifier": "", + "assay bead identifier": "N/A", "assay bead count": { "value": 33.0, "unit": "#" @@ -11879,7 +10423,7 @@ ], "container type": "well plate", "plate well count": { - "value": -0.0, + "value": 24.0, "unit": "#" } } From e66216c29a06f153daedec6d994fe040f17b1bc6 Mon Sep 17 00:00:00 2001 From: Felipe Narvaez Date: Thu, 28 Aug 2025 11:35:40 -0500 Subject: [PATCH 4/5] Changed the logic to get the number of wells --- src/allotropy/parsers/constants.py | 15 +++++++++-- .../luminex_xponent/luminex_xponent_reader.py | 3 ++- .../luminex_intelliflex_single_dataset.json | 26 +++++++++---------- 3 files changed, 28 insertions(+), 16 deletions(-) diff --git a/src/allotropy/parsers/constants.py b/src/allotropy/parsers/constants.py index b9a8a5e890..ecf6d423ec 100644 --- a/src/allotropy/parsers/constants.py +++ b/src/allotropy/parsers/constants.py @@ -10,8 +10,19 @@ POSSIBLE_WELL_COUNTS = [1, 2, 4, 6, 8, 12, 24, 48, 72, 96, 384, 1536, 3456] -def round_to_nearest_well_count(well_count: int) -> int | None: - for possible_count in POSSIBLE_WELL_COUNTS: +def round_to_nearest_well_count( + well_count: int, possible_well_counts: list[int] | None = None +) -> int | None: + """ + Round the well count to the nearest well count in the list of possible well counts. If a list + of possible well counts is not provided, use the default list of possible well counts. + If the well count is not in the list of possible well counts, return None. + """ + well_counts = ( + POSSIBLE_WELL_COUNTS if possible_well_counts is None else possible_well_counts + ) + well_counts.sort() + for possible_count in well_counts: if well_count > possible_count: continue return possible_count diff --git a/src/allotropy/parsers/luminex_xponent/luminex_xponent_reader.py b/src/allotropy/parsers/luminex_xponent/luminex_xponent_reader.py index b79e86aa03..e8e90bc0f2 100644 --- a/src/allotropy/parsers/luminex_xponent/luminex_xponent_reader.py +++ b/src/allotropy/parsers/luminex_xponent/luminex_xponent_reader.py @@ -227,11 +227,12 @@ def add_mandatory_columns( def _get_well_count(df: pd.DataFrame) -> int: # Count unique values in WELL LOCATION matching Excel-like cell ids: Letter(s) + Number(s) # Example matches: A1, B12, AA3 + accepted_well_counts = [96, 384] pattern = r"^[A-Za-z]+\d+$" values = df["WELL LOCATION"].astype(str).str.strip() matching = values[values.str.match(pattern)] unique_count = int(matching.str.upper().nunique()) - nearest = round_to_nearest_well_count(unique_count) + nearest = round_to_nearest_well_count(unique_count, accepted_well_counts) return int(nearest or 0) @classmethod diff --git a/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.json b/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.json index a309207312..54b3b6ff69 100644 --- a/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.json +++ b/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.json @@ -799,7 +799,7 @@ ], "container type": "well plate", "plate well count": { - "value": 24.0, + "value": 96.0, "unit": "#" } } @@ -1601,7 +1601,7 @@ ], "container type": "well plate", "plate well count": { - "value": 24.0, + "value": 96.0, "unit": "#" } } @@ -2403,7 +2403,7 @@ ], "container type": "well plate", "plate well count": { - "value": 24.0, + "value": 96.0, "unit": "#" } } @@ -3205,7 +3205,7 @@ ], "container type": "well plate", "plate well count": { - "value": 24.0, + "value": 96.0, "unit": "#" } } @@ -4007,7 +4007,7 @@ ], "container type": "well plate", "plate well count": { - "value": 24.0, + "value": 96.0, "unit": "#" } } @@ -4809,7 +4809,7 @@ ], "container type": "well plate", "plate well count": { - "value": 24.0, + "value": 96.0, "unit": "#" } } @@ -5611,7 +5611,7 @@ ], "container type": "well plate", "plate well count": { - "value": 24.0, + "value": 96.0, "unit": "#" } } @@ -6413,7 +6413,7 @@ ], "container type": "well plate", "plate well count": { - "value": 24.0, + "value": 96.0, "unit": "#" } } @@ -7215,7 +7215,7 @@ ], "container type": "well plate", "plate well count": { - "value": 24.0, + "value": 96.0, "unit": "#" } } @@ -8017,7 +8017,7 @@ ], "container type": "well plate", "plate well count": { - "value": 24.0, + "value": 96.0, "unit": "#" } } @@ -8819,7 +8819,7 @@ ], "container type": "well plate", "plate well count": { - "value": 24.0, + "value": 96.0, "unit": "#" } } @@ -9621,7 +9621,7 @@ ], "container type": "well plate", "plate well count": { - "value": 24.0, + "value": 96.0, "unit": "#" } } @@ -10423,7 +10423,7 @@ ], "container type": "well plate", "plate well count": { - "value": 24.0, + "value": 96.0, "unit": "#" } } From 3bc33d70eb8a54d897f2e43776acd2ec2dd09609 Mon Sep 17 00:00:00 2001 From: Felipe Narvaez Date: Tue, 2 Sep 2025 10:01:05 -0500 Subject: [PATCH 5/5] Updated as per PR comments --- src/allotropy/parsers/constants.py | 4 +- src/allotropy/parsers/lines_reader.py | 3 - .../parsers/luminex_xponent/constants.py | 1 + .../luminex_xponent/luminex_xponent_reader.py | 15 +- .../luminex_intelliflex_single_dataset.csv | 10 - .../luminex_intelliflex_single_dataset.json | 13012 +--------------- 6 files changed, 261 insertions(+), 12784 deletions(-) diff --git a/src/allotropy/parsers/constants.py b/src/allotropy/parsers/constants.py index ecf6d423ec..128e5631dd 100644 --- a/src/allotropy/parsers/constants.py +++ b/src/allotropy/parsers/constants.py @@ -18,9 +18,7 @@ def round_to_nearest_well_count( of possible well counts is not provided, use the default list of possible well counts. If the well count is not in the list of possible well counts, return None. """ - well_counts = ( - POSSIBLE_WELL_COUNTS if possible_well_counts is None else possible_well_counts - ) + well_counts = possible_well_counts or POSSIBLE_WELL_COUNTS well_counts.sort() for possible_count in well_counts: if well_count > possible_count: diff --git a/src/allotropy/parsers/lines_reader.py b/src/allotropy/parsers/lines_reader.py index 28a14f39b9..2bff1cc447 100644 --- a/src/allotropy/parsers/lines_reader.py +++ b/src/allotropy/parsers/lines_reader.py @@ -40,9 +40,6 @@ def __init__(self, lines: list[str]) -> None: def line_exists(self, line: int) -> bool: return 0 <= line < len(self.lines) - def line_with_pattern_exists(self, pattern: str) -> bool: - return any(search(pattern, line) for line in self.lines) - def current_line_exists(self) -> bool: return self.line_exists(self.current_line) diff --git a/src/allotropy/parsers/luminex_xponent/constants.py b/src/allotropy/parsers/luminex_xponent/constants.py index 54dceae701..097dfc45b1 100644 --- a/src/allotropy/parsers/luminex_xponent/constants.py +++ b/src/allotropy/parsers/luminex_xponent/constants.py @@ -15,6 +15,7 @@ EXPECTED_CALIBRATION_RESULT_LEN = 2 EXPECTED_HEADER_COLUMNS = 7 REQUIRED_SECTIONS = ["Count", "Units", "Dilution Factor"] +POSSIBLE_WELL_COUNTS_LUMINEX = [96, 384] @dataclass(frozen=True) diff --git a/src/allotropy/parsers/luminex_xponent/luminex_xponent_reader.py b/src/allotropy/parsers/luminex_xponent/luminex_xponent_reader.py index e8e90bc0f2..b36e00b594 100644 --- a/src/allotropy/parsers/luminex_xponent/luminex_xponent_reader.py +++ b/src/allotropy/parsers/luminex_xponent/luminex_xponent_reader.py @@ -64,16 +64,6 @@ class SingleDatasetParser: "SAMPLE ID", ] - @staticmethod - def is_reporter_format(lines: list[str]) -> bool: - """Return True if the first line looks like the single-dataset format header.""" - first_line = lines[0] if lines else "" - return ( - "INSTRUMENT TYPE" in first_line - and "WELL LOCATION" in first_line - and "SAMPLE ID" in first_line - ) - @staticmethod def parse_header(col: str) -> tuple[str, str] | None: """Parse a column header into (analyte_label, metric_token). @@ -227,12 +217,13 @@ def add_mandatory_columns( def _get_well_count(df: pd.DataFrame) -> int: # Count unique values in WELL LOCATION matching Excel-like cell ids: Letter(s) + Number(s) # Example matches: A1, B12, AA3 - accepted_well_counts = [96, 384] pattern = r"^[A-Za-z]+\d+$" values = df["WELL LOCATION"].astype(str).str.strip() matching = values[values.str.match(pattern)] unique_count = int(matching.str.upper().nunique()) - nearest = round_to_nearest_well_count(unique_count, accepted_well_counts) + nearest = round_to_nearest_well_count( + unique_count, constants.POSSIBLE_WELL_COUNTS_LUMINEX + ) return int(nearest or 0) @classmethod diff --git a/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.csv b/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.csv index 506eb8aa50..2707b6c7a9 100644 --- a/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.csv +++ b/tests/parsers/luminex_intelliflex/testdata/luminex_intelliflex_single_dataset.csv @@ -2,13 +2,3 @@ INSTRUMENT TYPE,SERIAL NUMBER,SOFTWARE VERSION,PLATE NAME,PLATE START,WELL LOCAT INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,11/8/2024 12:12,A1,Unknown1,130.55469,28,130.55469,6.69629,28,6.69629,101.68555,43,101.68555,6.28516,43,6.28516,117.87695,45,117.87695,6.27539,45,6.27539,99.15234,37,99.15234,7.0957,37,7.0957,117.19629,32,117.19629,5.87012,32,5.87012,117.51758,31,117.51758,7.52734,31,7.52734,96.92578,37,96.92578,5.60352,37,5.60352,123.01563,32,123.01563,6.33984,32,6.33984,121.04004,38,121.04004,7.25586,38,7.25586,122.23633,33,122.23633,6.91797,33,6.91797,118.92676,38,118.92676,6.91699,38,6.91699,124.41211,27,124.41211,5.98438,27,5.98438,118.2168,47,118.2168,7.49609,47,7.49609,119.7168,43,119.7168,7.9668,43,7.9668 INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 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1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,11/8/2024 12:12,E1,Unknown49,131.63574,36,131.63574,9.06152,36,9.06152,105.72461,61,105.72461,6.45313,61,6.45313,123.92773,43,123.92773,6.69922,43,6.69922,114.93164,41,114.93164,8.49023,41,8.49023,130.625,37,130.625,7.06641,37,7.06641,130.24023,26,130.24023,5.40918,26,5.40918,110.51172,40,110.51172,7.40918,40,7.40918,125.45508,44,125.45508,5.79297,44,5.79297,116.75977,43,116.75977,6.8457,43,6.8457,123.11719,38,123.11719,6.00098,38,6.00098,116.76172,39,116.76172,6.625,39,6.625,130.2832,25,130.2832,6.97656,25,6.97656,113.45605,56,113.45605,6.34473,56,6.34473,128.5664,43,128.5664,6.71484,43,6.71484 -INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 2.0.5/Shell - 1.0.0,PLATE_11082024_RUN000,11/8/2024 12:12,F1,Unknown61,130.39453,27,130.39453,6.7793,27,6.7793,85.59082,30,85.59082,6.49316,30,6.49316,129.2207,33,129.2207,7.18555,33,7.18555,107.88867,32,107.88867,7.63184,32,7.63184,125.70313,28,125.70313,7.5752,28,7.5752,114.60156,35,114.60156,6.14844,35,6.14844,96.55859,34,96.55859,6.13965,34,6.13965,105.91504,40,105.91504,7.20996,40,7.20996,115.81543,34,115.81543,7.32813,34,7.32813,116.83301,26,116.83301,6.92773,26,6.92773,112.3125,34,112.3125,6.64551,34,6.64551,131.3711,31,131.3711,4.60938,31,4.60938,106.99219,35,106.99219,7.31445,35,7.31445,112.64453,26,112.64453,5.44141,26,5.44141 -INTELLIFLEX,IFLEXP24099001,Luminex INTELLIFLEX Bundle - 2.0.1017/Luminex INTELLIFLEX Instrument Control - 4.7.33.0/Luminex INTELLIFLEX Services - 2.0.169.0/Luminex INTELLIFLEX Touchscreen - 2.0.101.0/Firmware Bootloader - 1.3.61/Firmware Executable Version - 2.0.15/Firmware Linux Kernel - 4.9.59/Firmware SD Image - 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"calculated result": { - "value": 116.98438, - "unit": "RFU" - }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_563", - "data source aggregate document": { - "data source document": [ - { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_562", - "data source feature": "fluorescence" - } - ] - } - }, - { - "calculated data name": "Avg Net MFI", - "calculated result": { - "value": 5.57324, - "unit": "RFU" - }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_565", - "data source aggregate document": { - "data source document": [ - { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_564", - "data source feature": "fluorescence" - } - ] - } - }, - { - "calculated data name": "Avg Net MFI", - "calculated result": { - "value": 120.99414, - "unit": "RFU" - }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_567", - "data source aggregate document": { - "data source document": [ - { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_566", - "data source feature": "fluorescence" - } - ] - } - }, - { - "calculated data name": "Avg Net MFI", - "calculated result": { - "value": 6.83203, - "unit": "RFU" - }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_569", - "data source aggregate document": { - "data source document": [ - { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_568", - "data source feature": "fluorescence" - } - ] - } - }, + } + ], + "calculated data aggregate document": { + "calculated data document": [ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 132.77734, + "value": 130.55469, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_572", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_2", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_571", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_1", "data source feature": "fluorescence" } ] @@ -14930,14 +2430,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 6.55859, + "value": 6.69629, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_574", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_4", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_573", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_3", "data source feature": "fluorescence" } ] @@ -14946,14 +2446,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 112.19043, + "value": 101.68555, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_576", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_6", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_575", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_5", "data source feature": "fluorescence" } ] @@ -14962,14 +2462,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 7.42188, + "value": 6.28516, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_578", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_8", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_577", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_7", "data source feature": "fluorescence" } ] @@ -14978,14 +2478,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 121.37891, + "value": 117.87695, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_580", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_10", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_579", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_9", "data source feature": "fluorescence" } ] @@ -14994,14 +2494,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 7.10938, + "value": 6.27539, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_582", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_12", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_581", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_11", "data source feature": "fluorescence" } ] @@ -15010,14 +2510,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 101.21289, + "value": 99.15234, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_584", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_14", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_583", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_13", "data source feature": "fluorescence" } ] @@ -15026,14 +2526,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 7.58203, + "value": 7.0957, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_586", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_16", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_585", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_15", "data source feature": "fluorescence" } ] @@ -15042,14 +2542,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 121.97266, + "value": 117.19629, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_588", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_18", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_587", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_17", "data source feature": "fluorescence" } ] @@ -15058,14 +2558,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 7.91309, + "value": 5.87012, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_590", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_20", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_589", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_19", "data source feature": "fluorescence" } ] @@ -15074,14 +2574,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 120.34961, + "value": 117.51758, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_592", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_22", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_591", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_21", "data source feature": "fluorescence" } ] @@ -15090,14 +2590,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 6.46875, + "value": 7.52734, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_594", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_24", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_593", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_23", "data source feature": "fluorescence" } ] @@ -15106,14 +2606,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 107.99609, + "value": 96.92578, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_596", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_26", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_595", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_25", "data source feature": "fluorescence" } ] @@ -15122,14 +2622,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 6.05273, + "value": 5.60352, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_598", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_28", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_597", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_27", "data source feature": "fluorescence" } ] @@ -15138,14 +2638,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 127.7832, + "value": 123.01563, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_600", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_30", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_599", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_29", "data source feature": "fluorescence" } ] @@ -15154,14 +2654,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 6.42871, + "value": 6.33984, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_602", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_32", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_601", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_31", "data source feature": "fluorescence" } ] @@ -15170,14 +2670,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 122.58594, + "value": 121.04004, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_604", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_34", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_603", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_33", "data source feature": "fluorescence" } ] @@ -15186,14 +2686,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 6.27051, + "value": 7.25586, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_606", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_36", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_605", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_35", "data source feature": "fluorescence" } ] @@ -15202,14 +2702,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 120.85938, + "value": 122.23633, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_608", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_38", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_607", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_37", "data source feature": "fluorescence" } ] @@ -15218,14 +2718,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 8.61719, + "value": 6.91797, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_610", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_40", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_609", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_39", "data source feature": "fluorescence" } ] @@ -15234,14 +2734,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 129.07617, + "value": 118.92676, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_612", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_42", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_611", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_41", "data source feature": "fluorescence" } ] @@ -15250,14 +2750,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 7.60254, + "value": 6.91699, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_614", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_44", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_613", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_43", "data source feature": "fluorescence" } ] @@ -15266,14 +2766,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 141.96777, + "value": 124.41211, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_616", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_46", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_615", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_45", "data source feature": "fluorescence" } ] @@ -15282,14 +2782,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 6.00879, + "value": 5.98438, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_618", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_48", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_617", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_47", "data source feature": "fluorescence" } ] @@ -15298,14 +2798,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 125.39551, + "value": 118.2168, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_620", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_50", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_619", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_49", "data source feature": "fluorescence" } ] @@ -15314,14 +2814,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 5.92188, + "value": 7.49609, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_622", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_52", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_621", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_51", "data source feature": "fluorescence" } ] @@ -15330,14 +2830,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 121.25391, + "value": 119.7168, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_624", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_54", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_623", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_53", "data source feature": "fluorescence" } ] @@ -15346,14 +2846,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 7.12305, + "value": 7.9668, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_626", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_56", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_625", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_55", "data source feature": "fluorescence" } ] @@ -15362,14 +2862,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 128.7207, + "value": 129.34082, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_629", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_59", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_628", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_58", "data source feature": "fluorescence" } ] @@ -15378,14 +2878,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 6.94824, + "value": 8.27637, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_631", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_61", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_630", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_60", "data source feature": "fluorescence" } ] @@ -15394,14 +2894,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 101.10938, + "value": 98.7207, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_633", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_63", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_632", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_62", "data source feature": "fluorescence" } ] @@ -15410,14 +2910,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 6.31641, + "value": 6.09375, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_635", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_65", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_634", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_64", "data source feature": "fluorescence" } ] @@ -15426,14 +2926,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 123.68457, + "value": 117.69531, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_637", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_67", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_636", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_66", "data source feature": "fluorescence" } ] @@ -15442,14 +2942,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 6.22656, + "value": 6.64453, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_639", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_69", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_638", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_68", "data source feature": "fluorescence" } ] @@ -15458,14 +2958,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 113.94531, + "value": 105.50781, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_641", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_71", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_640", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_70", "data source feature": "fluorescence" } ] @@ -15474,14 +2974,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 7.35742, + "value": 8.84766, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_643", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_73", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_642", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_72", "data source feature": "fluorescence" } ] @@ -15490,14 +2990,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 131.0752, + "value": 119.65918, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_645", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_75", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_644", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_74", "data source feature": "fluorescence" } ] @@ -15506,14 +3006,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 6.39258, + "value": 7.29395, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_647", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_77", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_646", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_76", "data source feature": "fluorescence" } ] @@ -15522,14 +3022,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 124.47852, + "value": 122.50391, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_649", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_79", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_648", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_78", "data source feature": "fluorescence" } ] @@ -15538,14 +3038,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 6.50586, + "value": 6.38672, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_651", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_81", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_650", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_80", "data source feature": "fluorescence" } ] @@ -15554,14 +3054,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 101.50195, + "value": 99.77734, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_653", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_83", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_652", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_82", "data source feature": "fluorescence" } ] @@ -15570,14 +3070,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 6.58008, + "value": 6.52734, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_655", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_85", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_654", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_84", "data source feature": "fluorescence" } ] @@ -15586,14 +3086,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 117.9668, + "value": 127.06445, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_657", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_87", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_656", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_86", "data source feature": "fluorescence" } ] @@ -15602,14 +3102,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 7.44727, + "value": 5.57617, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_659", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_89", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_658", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_88", "data source feature": "fluorescence" } ] @@ -15618,14 +3118,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 119.88184, + "value": 124.65234, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_661", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_91", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_660", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_90", "data source feature": "fluorescence" } ] @@ -15634,14 +3134,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 6.19141, + "value": 6.69727, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_663", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_93", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_662", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_92", "data source feature": "fluorescence" } ] @@ -15650,14 +3150,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 116.80078, + "value": 120.28711, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_665", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_95", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_664", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_94", "data source feature": "fluorescence" } ] @@ -15666,14 +3166,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 7.97656, + "value": 6.76172, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_667", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_97", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_666", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_96", "data source feature": "fluorescence" } ] @@ -15682,14 +3182,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 121.03516, + "value": 118.68555, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_669", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_99", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_668", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_98", "data source feature": "fluorescence" } ] @@ -15698,14 +3198,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 7.25391, + "value": 6.75391, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_671", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_101", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_670", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_100", "data source feature": "fluorescence" } ] @@ -15714,14 +3214,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 129.13672, + "value": 131.11523, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_673", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_103", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_672", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_102", "data source feature": "fluorescence" } ] @@ -15730,14 +3230,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 5.50781, + "value": 5.0918, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_675", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_105", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_674", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_104", "data source feature": "fluorescence" } ] @@ -15746,14 +3246,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 121.48145, + "value": 116.93164, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_677", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_107", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_676", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_106", "data source feature": "fluorescence" } ] @@ -15762,14 +3262,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 7.36035, + "value": 6.58203, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_679", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_109", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_678", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_108", "data source feature": "fluorescence" } ] @@ -15778,14 +3278,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 124.10352, + "value": 113.65039, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_681", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_111", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_680", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_110", "data source feature": "fluorescence" } ] @@ -15794,14 +3294,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 4.97461, + "value": 6.49805, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_683", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_113", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_682", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_112", "data source feature": "fluorescence" } ] @@ -15810,14 +3310,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 134.18262, + "value": 125.48828, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_686", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_116", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_685", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_115", "data source feature": "fluorescence" } ] @@ -15826,14 +3326,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 7.10547, + "value": 6.93555, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_688", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_118", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_687", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_117", "data source feature": "fluorescence" } ] @@ -15842,14 +3342,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 102.55664, + "value": 97.64648, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_690", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_120", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_689", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_119", "data source feature": "fluorescence" } ] @@ -15858,14 +3358,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 6.66406, + "value": 6.48633, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_692", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_122", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_691", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_121", "data source feature": "fluorescence" } ] @@ -15874,14 +3374,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 126.6875, + "value": 122.93848, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_694", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_124", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_693", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_123", "data source feature": "fluorescence" } ] @@ -15890,14 +3390,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 6.98438, + "value": 8.65234, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_696", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_126", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_695", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_125", "data source feature": "fluorescence" } ] @@ -15906,14 +3406,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 116.95996, + "value": 105.80859, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_698", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_128", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_697", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_127", "data source feature": "fluorescence" } ] @@ -15922,14 +3422,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 7.88477, + "value": 6.125, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_700", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_130", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_699", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_129", "data source feature": "fluorescence" } ] @@ -15938,14 +3438,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 123.03516, + "value": 122.6377, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_702", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_132", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_701", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_131", "data source feature": "fluorescence" } ] @@ -15954,14 +3454,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 6.82813, + "value": 8.40332, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_704", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_134", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_703", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_133", "data source feature": "fluorescence" } ] @@ -15970,14 +3470,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 126.12109, + "value": 123.63086, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_706", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_136", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_705", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_135", "data source feature": "fluorescence" } ] @@ -15986,14 +3486,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 5.7959, + "value": 5.08398, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_708", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_138", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_707", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_137", "data source feature": "fluorescence" } ] @@ -16002,14 +3502,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 98.33008, + "value": 107.95508, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_710", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_140", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_709", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_139", "data source feature": "fluorescence" } ] @@ -16018,14 +3518,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 8.16211, + "value": 7.55273, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_712", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_142", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_711", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_141", "data source feature": "fluorescence" } ] @@ -16034,14 +3534,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 122.75195, + "value": 120.92773, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_714", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_144", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_713", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_143", "data source feature": "fluorescence" } ] @@ -16050,14 +3550,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 7.02148, + "value": 6.49512, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_716", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_146", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_715", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_145", "data source feature": "fluorescence" } ] @@ -16066,14 +3566,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 125.58789, + "value": 124.46094, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_718", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_148", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_717", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_147", "data source feature": "fluorescence" } ] @@ -16082,14 +3582,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 5.93164, + "value": 7.07227, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_720", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_150", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_719", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_149", "data source feature": "fluorescence" } ] @@ -16098,14 +3598,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 119.26563, + "value": 124.34082, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_722", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_152", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_721", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_151", "data source feature": "fluorescence" } ] @@ -16114,14 +3614,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 6.9375, + "value": 7.52441, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_724", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_154", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_723", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_153", "data source feature": "fluorescence" } ] @@ -16130,14 +3630,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 118.83691, + "value": 119.18945, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_726", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_156", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_725", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_155", "data source feature": "fluorescence" } ] @@ -16146,14 +3646,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 6.9668, + "value": 6.07227, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_728", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_158", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_727", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_157", "data source feature": "fluorescence" } ] @@ -16162,14 +3662,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 141.56445, + "value": 135.54297, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_730", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_160", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_729", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_159", "data source feature": "fluorescence" } ] @@ -16178,14 +3678,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 6.22656, + "value": 6.28711, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_732", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_162", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_731", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_161", "data source feature": "fluorescence" } ] @@ -16194,14 +3694,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 113.82227, + "value": 123.0, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_734", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_164", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_733", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_163", "data source feature": "fluorescence" } ] @@ -16210,14 +3710,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 7.21484, + "value": 5.56055, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_736", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_166", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_735", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_165", "data source feature": "fluorescence" } ] @@ -16226,14 +3726,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 117.31836, + "value": 124.20508, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_738", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_168", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_737", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_167", "data source feature": "fluorescence" } ] @@ -16242,14 +3742,14 @@ { "calculated data name": "Avg Net MFI", "calculated result": { - "value": 5.62109, + "value": 5.98047, "unit": "RFU" }, - "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_740", + "calculated data identifier": "LUMINEX_INTELLIFLEX_TEST_ID_170", "data source aggregate document": { "data source document": [ { - "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_739", + "data source identifier": "LUMINEX_INTELLIFLEX_TEST_ID_169", "data source feature": "fluorescence" } ]