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feat: Cytiva Biacore T200 Evaluation Module - initial implementation - #1075

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joshua-benchling merged 20 commits into
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jherna/cytiva-biacore-evaluation-module
Oct 3, 2025
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feat: Cytiva Biacore T200 Evaluation Module - initial implementation#1075
joshua-benchling merged 20 commits into
mainfrom
jherna/cytiva-biacore-evaluation-module

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joshua-benchling requested review from a team and slopez-b as code owners September 16, 2025 15:11
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joshua-benchling marked this pull request as draft September 16, 2025 16:39
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joshua-benchling marked this pull request as ready for review September 17, 2025 16:24
james-leinas
james-leinas previously approved these changes Sep 18, 2025

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ASM Approval ☑️

james-leinas
james-leinas previously approved these changes Sep 23, 2025
…cument integration

- Implement kinetic analysis extraction (kon, koff, KD, Rmax) with proper units
- Add custom information documents for kinetic errors and Chi2 values
- Support reference-subtracted flow cells (e.g., 2-1, 3-1, 4-1)
- Process multiple cycles and flow cells with proper filtering
- Integrate DeviceControlDocument class for device control data
- Add sensor chip custom information fields
- Set up Git LFS for large binary test files (.bme)
- Change measurement identifier from concatenated string to simple UUID
- Reference-subtracted flow cells (2-1, 3-1, 4-1) already have correct flow cell identifiers
- Data cube labels automatically use reference-subtracted IDs for proper identification
- Update _normalize_flow_cell_id to preserve hyphenated flow cell IDs (e.g., '2-1', '3-1', '4-1')
- Remove duplicate reference-subtracted flow cell creation loop since they exist in sensorgram data
- Now reference-subtracted flow cells will have correct identifiers in both flow_cell_identifier and data cube labels
- Simplifies code by processing all flow cells in single loop
@joshua-benchling
joshua-benchling force-pushed the jherna/cytiva-biacore-evaluation-module branch from da6197f to 824ae82 Compare October 1, 2025 20:04
@nathan-stender nathan-stender changed the title feat: Cytiva Biacore T200 Evaluation Module - First implementation feat: Cytiva Biacore T200 Evaluation Module - initial implementation Oct 3, 2025

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:shipit:

@joshua-benchling
joshua-benchling merged commit 8210ad7 into main Oct 3, 2025
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@joshua-benchling
joshua-benchling deleted the jherna/cytiva-biacore-evaluation-module branch October 3, 2025 14:59
nathan-stender added a commit that referenced this pull request Oct 9, 2025
### Added

- Thermo Fisher Scientific Genesys30 - add unread data (#1093)
- Mabtech Apex - support files with different plate info (#1099)
- Cytiva Biacore T200 Evaluation Module - initial implementation (#1075)

### Fixed

- Thermo Fisher Scientific Qubit Flex - added handling for sep header
(#1101)
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3 participants