feat: Cytiva Biacore Insight/Cytiva Biacore T200 Control - Update Slope calculated data's reported units to RU/s

src/allotropy/allotrope/models/adm/binding_affinity/rec/_2025/_03/binding_affinity.py

@@ -1,6 +1,6 @@
 # generated by datamodel-codegen:
 #   filename:  binding-affinity.schema.json
-#   timestamp: 2025-04-21T17:58:26+00:00
+#   timestamp: 2025-09-17T17:07:42+00:00
 
 from __future__ import annotations
 
@@ -16,6 +16,7 @@
     TQuantityValueNanomolar,
     TQuantityValuePercent,
     TQuantityValuePerMolarPerSecond,
+    TQuantityValueResponseUnit,
     TQuantityValueSecondTime,
 )
 from allotropy.allotrope.models.shared.definitions.definitions import (
@@ -80,9 +81,6 @@ class StatisticsAggregateDocument:
     statistics_document: list[StatisticsDocumentItem] | None = None
 
 
-TQuantityValueResponseUnit = Any
-
-
 @dataclass(kw_only=True)
 class TQuantityValueModel:
     unit: TUnit

src/allotropy/allotrope/models/adm/binding_affinity_analyzer/wd/_2024/_12/binding_affinity_analyzer.py

@@ -1,6 +1,6 @@
 # generated by datamodel-codegen:
 #   filename:  binding-affinity-analyzer.schema.json
-#   timestamp: 2025-08-29T17:23:20+00:00
+#   timestamp: 2025-09-17T17:09:51+00:00
 
 from __future__ import annotations
 
@@ -16,7 +16,7 @@
     TQuantityValuePercent,
     TQuantityValuePerMolarPerSecond,
     TQuantityValuePerSecond,
-    TQuantityValueResonanceUnits,
+    TQuantityValueResponseUnit,
     TQuantityValueSecondTime,
 )
 from allotropy.allotrope.models.shared.definitions.definitions import (
@@ -105,10 +105,10 @@ class AnalysisSequenceDocument:
 
 @dataclass(kw_only=True)
 class ReportPointDocumentItem:
-    absolute_resonance: TQuantityValueResonanceUnits | None = None
+    absolute_resonance: TQuantityValueResponseUnit | None = None
     report_point_identifier: TStringValue | None = None
     identifier_role: TStringValue | None = None
-    relative_resonance: TQuantityValueResonanceUnits | None = None
+    relative_resonance: TQuantityValueResponseUnit | None = None
     time_setting: TQuantityValueSecondTime | None = None
 
 
@@ -273,7 +273,7 @@ class ProcessedDataDocumentItem:
     )
     binding_off_rate_measurement_datum__koff_: TQuantityValuePerSecond | None = None
     equilibrium_dissociation_constant__KD_: TQuantityValueMolar | None = None
-    maximum_binding_capacity__Rmax_: TQuantityValueResonanceUnits | None = None
+    maximum_binding_capacity__Rmax_: TQuantityValueResponseUnit | None = None
     report_point_aggregate_document: ReportPointAggregateDocument | None = None
 
 

src/allotropy/allotrope/models/shared/definitions/custom.py

@@ -66,12 +66,13 @@
     RelativeLightUnit,
     RelativeLightUnitTimesMilliliter,
     RelativeLightUnitTimesSecond,
-    ResonanceUnits,
+    ResponseUnit,
+    ResponseUnitPerSecond,
     SecondTime,
     SeimensPerMeter,
     SquareCentimetersPerGram,
     SquareCentimetersPerMole,
-    SquareResonanceUnits,
+    SquareResponseUnit,
     TODO,
     Unitless,
     UnitPerLiter,
@@ -755,12 +756,24 @@ class TNullableQuantityValueRelativeLightUnitTimesSecond(
 
 
 @dataclass(frozen=True, kw_only=True)
-class TQuantityValueResonanceUnits(ResonanceUnits, TQuantityValue):
+class TQuantityValueResponseUnit(ResponseUnit, TQuantityValue):
     pass
 
 
 @dataclass(frozen=True, kw_only=True)
-class TNullableQuantityValueResonanceUnits(ResonanceUnits, TNullableQuantityValue):
+class TNullableQuantityValueResponseUnit(ResponseUnit, TNullableQuantityValue):
+    pass
+
+
+@dataclass(frozen=True, kw_only=True)
+class TQuantityValueResponseUnitPerSecond(ResponseUnitPerSecond, TQuantityValue):
+    pass
+
+
+@dataclass(frozen=True, kw_only=True)
+class TNullableQuantityValueResponseUnitPerSecond(
+    ResponseUnitPerSecond, TNullableQuantityValue
+):
     pass
 
 
@@ -809,13 +822,13 @@ class TNullableQuantityValueSquareCentimetersPerMole(
 
 
 @dataclass(frozen=True, kw_only=True)
-class TQuantityValueSquareResonanceUnits(SquareResonanceUnits, TQuantityValue):
+class TQuantityValueSquareResponseUnit(SquareResponseUnit, TQuantityValue):
     pass
 
 
 @dataclass(frozen=True, kw_only=True)
-class TNullableQuantityValueSquareResonanceUnits(
-    SquareResonanceUnits, TNullableQuantityValue
+class TNullableQuantityValueSquareResponseUnit(
+    SquareResponseUnit, TNullableQuantityValue
 ):
     pass
 

src/allotropy/allotrope/models/shared/definitions/units.py

@@ -310,10 +310,15 @@ class RelativeLightUnitTimesSecond(HasUnit):
 
 
 @dataclass(frozen=True, kw_only=True)
-class ResonanceUnits(HasUnit):
+class ResponseUnit(HasUnit):
     unit: str = "RU"
 
 
+@dataclass(frozen=True, kw_only=True)
+class ResponseUnitPerSecond(HasUnit):
+    unit: str = "RU/s"
+
+
 @dataclass(frozen=True, kw_only=True)
 class SecondTime(HasUnit):
     unit: str = "s"
@@ -335,7 +340,7 @@ class SquareCentimetersPerMole(HasUnit):
 
 
 @dataclass(frozen=True, kw_only=True)
-class SquareResonanceUnits(HasUnit):
+class SquareResponseUnit(HasUnit):
     unit: str = "RU^2"
 
 

src/allotropy/allotrope/schema_mappers/adm/binding_affinity_analyzer/benchling/_2024/_12/binding_affinity_analyzer.py

@@ -33,7 +33,7 @@
     TQuantityValuePercent,
     TQuantityValuePerMolarPerSecond,
     TQuantityValuePerSecond,
-    TQuantityValueResonanceUnits,
+    TQuantityValueResponseUnit,
     TQuantityValueSecondTime,
 )
 from allotropy.allotrope.models.shared.definitions.definitions import TDatacube
@@ -256,7 +256,7 @@ def _get_surface_plasmon_resonance_measurement_document(
                 measurement.equilibrium_dissociation_constant__kd_,
             ),
             maximum_binding_capacity__Rmax_=quantity_or_none(
-                TQuantityValueResonanceUnits,
+                TQuantityValueResponseUnit,
                 measurement.maximum_binding_capacity__rmax_,
             ),
             report_point_aggregate_document=(
@@ -266,11 +266,11 @@ def _get_surface_plasmon_resonance_measurement_document(
                             ReportPointDocumentItem(
                                 report_point_identifier=report_point.identifier,
                                 identifier_role=report_point.identifier_role,
-                                absolute_resonance=TQuantityValueResonanceUnits(
+                                absolute_resonance=TQuantityValueResponseUnit(
                                     value=report_point.absolute_resonance
                                 ),
                                 relative_resonance=quantity_or_none(
-                                    TQuantityValueResonanceUnits,
+                                    TQuantityValueResponseUnit,
                                     report_point.relative_resonance,
                                 ),
                                 time_setting=TQuantityValueSecondTime(

src/allotropy/allotrope/schemas/adm/binding-affinity-analyzer/WD/2024/12/binding-affinity-analyzer.schema.json

@@ -216,7 +216,7 @@
                                                                                                                 "$ref": "http://purl.allotrope.org/json-schemas/adm/core/REC/2024/09/core.schema#/$defs/tQuantityValue"
                                                                                                             },
                                                                                                             {
-                                                                                                                "$ref": "http://purl.allotrope.org/json-schemas/qudt/REC/2024/09/units.schema#/$defs/ResonanceUnits"
+                                                                                                                "$ref": "http://purl.allotrope.org/json-schemas/qudt/REC/2024/09/units.schema#/$defs/ResponseUnit"
                                                                                                             }
                                                                                                         ]
                                                                                                     }
@@ -4958,7 +4958,7 @@
                         "unit": {
                             "type": "string",
                             "const": "RU",
-                            "$asm.unit-iri": "http://qudt.org/vocab/unit#ResonanceUnits"
+                            "$asm.unit-iri": "http://purl.allotrope.org/ontology/qudt-ext/unit#ResponseUnit"
                         }
                     },
                     "required": [
@@ -4970,7 +4970,7 @@
                         "unit": {
                             "type": "string",
                             "const": "RU/s",
-                            "$asm.unit-iri": "http://qudt.org/vocab/unit#ResonanceUnitsPerSecond"
+                            "$asm.unit-iri": "http://purl.allotrope.org/ontology/qudt-ext/unit#ResponseUnitPerSecond"
                         }
                     },
                     "required": [

src/allotropy/allotrope/schemas/adm/binding-affinity/REC/2025/03/binding-affinity.schema.json

@@ -12276,4 +12276,4 @@
   "required": [
     "$asm.manifest"
   ]
-}
+}

src/allotropy/allotrope/schemas/adm/flow-cytometry/BENCHLING/2025/03/flow-cytometry.schema.json

@@ -11565,7 +11565,7 @@
         "RU/s": {
           "properties": {
             "unit": {
-              "$asm.unit-iri": "http://qudt.org/vocab/unit#ResponseUnitsPerSecond",
+              "$asm.unit-iri": "http://purl.allotrope.org/ontology/qudt-ext/unit#ResponseUnitPerSecond",
               "const": "RU/s",
               "type": "string"
             }

src/allotropy/allotrope/schemas/shared/definitions/custom.json

@@ -1199,23 +1199,43 @@
       }
     ]
   },
-  "tQuantityValueResonanceUnits": {
+  "TQuantityValueResponseUnit": {
     "allOf": [
       {
         "$ref": "#/$defs/tQuantityValue"
       },
       {
-        "$ref": "#/$defs/ResonanceUnits"
+        "$ref": "#/$defs/ResponseUnit"
       }
     ]
   },
-  "tNullableQuantityValueResonanceUnits": {
+  "tNullableQuantityValueResponseUnit": {
     "allOf": [
       {
         "$ref": "#/$defs/tNullableQuantityValue"
       },
       {
-        "$ref": "#/$defs/ResonanceUnits"
+        "$ref": "#/$defs/ResponseUnit"
+      }
+    ]
+  },
+  "TQuantityValueResponseUnitPerSecond": {
+    "allOf": [
+      {
+        "$ref": "#/$defs/tQuantityValue"
+      },
+      {
+        "$ref": "#/$defs/ResponseUnitPerSecond"
+      }
+    ]
+  },
+  "tNullableQuantityValueResponseUnitPerSecond": {
+    "allOf": [
+      {
+        "$ref": "#/$defs/tNullableQuantityValue"
+      },
+      {
+        "$ref": "#/$defs/ResponseUnitPerSecond"
       }
     ]
   },
@@ -1299,23 +1319,23 @@
       }
     ]
   },
-  "tQuantityValueSquareResonanceUnits": {
+  "tQuantityValueSquareResponseUnit": {
     "allOf": [
       {
         "$ref": "#/$defs/tQuantityValue"
       },
       {
-        "$ref": "#/$defs/SquareResonanceUnits"
+        "$ref": "#/$defs/SquareResponseUnit"
       }
     ]
   },
-  "tNullableQuantityValueSquareResonanceUnits": {
+  "tNullableQuantityValueSquareResponseUnit": {
     "allOf": [
       {
         "$ref": "#/$defs/tNullableQuantityValue"
       },
       {
-        "$ref": "#/$defs/SquareResonanceUnits"
+        "$ref": "#/$defs/SquareResponseUnit"
       }
     ]
   },
@@ -1379,4 +1399,4 @@
       }
     ]
   }
-}
+}

src/allotropy/allotrope/schemas/shared/definitions/units.json

@@ -719,12 +719,24 @@
       "unit"
     ]
   },
-  "ResonanceUnits": {
+  "ResponseUnit": {
     "properties": {
       "unit": {
         "type": "string",
         "const": "RU",
-        "$asm.unit-iri": "http://qudt.org/vocab/unit#ResonanceUnits"
+        "$asm.unit-iri": "http://purl.allotrope.org/ontology/qudt-ext/unit#ResponseUnit"
+      }
+    },
+    "required": [
+      "unit"
+    ]
+  },
+  "ResponseUnitPerSecond": {
+    "properties": {
+      "unit": {
+        "type": "string",
+        "const": "RU/s",
+        "$asm.unit-iri": "http://purl.allotrope.org/ontology/qudt-ext/unit#ResponseUnitPerSecond"
       }
     },
     "required": [
@@ -779,7 +791,7 @@
       "unit"
     ]
   },
-  "SquareResonanceUnits": {
+  "SquareResponseUnit": {
     "properties": {
       "unit": {
         "type": "string",

src/allotropy/parsers/cytiva_biacore_insight/cytiva_biacore_insight_data_creator.py

@@ -4,10 +4,13 @@
     TQuantityValueHertz,
     TQuantityValueNumber,
     TQuantityValueSecondTime,
-    TQuantityValueSquareResonanceUnits,
+    TQuantityValueSquareResponseUnit,
     TQuantityValueUnitless,
 )
-from allotropy.allotrope.models.shared.definitions.units import Unitless
+from allotropy.allotrope.models.shared.definitions.units import (
+    ResponseUnitPerSecond,
+    Unitless,
+)
 from allotropy.allotrope.schema_mappers.adm.binding_affinity_analyzer.benchling._2024._12.binding_affinity_analyzer import (
     Measurement,
     MeasurementGroup,
@@ -107,7 +110,7 @@ def _get_measurements(
             processed_data_custom_info=(
                 {
                     "Kinetics Chi squared": quantity_or_none(
-                        TQuantityValueSquareResonanceUnits,
+                        TQuantityValueSquareResponseUnit,
                         measurement.kinetics.kinetics_chi_squared,
                     ),
                     "tc": quantity_or_none(
@@ -174,7 +177,7 @@ def _get_report_point_calc_data(rp: ReportPointData) -> list[CalculatedDocument]
                 name="Slope",
                 value=rp.slope,
                 data_sources=[data_source],
-                unit=Unitless.unit,
+                unit=ResponseUnitPerSecond.unit,
             )
         )
     if rp.standard_deviation is not None:

src/allotropy/parsers/cytiva_biacore_insight/cytiva_biacore_insight_structure.py

@@ -11,7 +11,7 @@
     TQuantityValueDalton,
     TQuantityValueMicroliterPerMinute,
     TQuantityValueNanomolar,
-    TQuantityValueResonanceUnits,
+    TQuantityValueResponseUnit,
     TQuantityValueSecondTime,
 )
 from allotropy.allotrope.schema_mappers.adm.binding_affinity_analyzer.benchling._2024._12.binding_affinity_analyzer import (
@@ -367,7 +367,7 @@ def create(
                             str, "Sensorgram type", run_info.get(str, "Sensorgram type")
                         ),
                         "Level": quantity_or_none(
-                            TQuantityValueResonanceUnits,
+                            TQuantityValueResponseUnit,
                             run_info.get(float, "Level (RU)"),
                         ),
                     },