Skip to content

fix: Map relative area group and calibration points in Chromeleon parser#1210

Merged
nathan-stender merged 1 commit into
mainfrom
fix/chromeleon-map-peak-custom-fields
May 27, 2026
Merged

fix: Map relative area group and calibration points in Chromeleon parser#1210
nathan-stender merged 1 commit into
mainfrom
fix/chromeleon-map-peak-custom-fields

Conversation

@nathan-stender

Copy link
Copy Markdown
Collaborator

Summary

  • Maps relative area group from peak data into peak custom information document
  • Maps number of calibration points from peak data into peak custom information document

Context

Follow-up to #1207. These two peak-level fields were identified as unmapped gaps between the old Chromeleon adapter output and the new allotropy parser output.

The gap report also flagged bandwidth setting and relative retention time but those are already correctly mapped (bandwidth as detector bandwidth setting, relative retention time as a standard peak field).

Test plan

  • Verified relative area group appears in output (e.g. 6.65 in Glycans peaks)
  • Verified number of calibration points appears in output (0.0 in BioChem/S15 peaks)
  • All Chromeleon parser tests pass
  • Regenerated new_updated/ output files for downstream CSV parser comparison

🤖 Generated with Claude Code

@nathan-stender
nathan-stender requested review from a team and slopez-b as code owners May 26, 2026 21:13
…meleon parser

These peak-level fields from the raw Chromeleon JSON were not being
mapped to the ASM output. They are now included in the peak custom
information document.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
@nathan-stender
nathan-stender force-pushed the fix/chromeleon-map-peak-custom-fields branch from 72f1112 to 237edba Compare May 26, 2026 23:16
@nathan-stender
nathan-stender merged commit c2295d1 into main May 27, 2026
9 checks passed
@nathan-stender
nathan-stender deleted the fix/chromeleon-map-peak-custom-fields branch May 27, 2026 04:13
nathan-stender added a commit that referenced this pull request May 27, 2026
### Fixed

- Map relative area group and calibration points in Chromeleon parser
(#1210)
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants