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Expand file tree Collapse file tree Original file line number Diff line number Diff line change 11#! /usr/bin/env bash
22
33set -e
4- set -x
54
65# virtualenv does not require --user
76PYTHON=$( which python)
@@ -14,8 +13,14 @@ find . -type f -name "*.py" | xargs -I file $PYTHON -m pylint \
1413 --exit-zero \
1514 -E file
1615
16+ # Run it in ./TestTSV directory.
17+ for _tsv in $( find ./TestTSV -name * .tsv -type f) ; do
18+ $PYTHON findSim.py ${_tsv} --model models/synSynth7.g
19+ done
20+
1721$PYTHON findSim.py ./Curated/FindSim-Jain2009_Fig4F.tsv --model models/synSynth7.g
1822$PYTHON findSim.py ./Curated/FindSim-Bhalla1999_fig2B.tsv --model models/synSynth7.g
19- $PYTHON findSim.py ./Curated/FindSim-Gu2004_fig3B.tsv --model models/synSynth7.g
23+ # Following takes a lot of time to run.
24+ # $PYTHON findSim.py ./Curated/FindSim-Gu2004_fig3B.tsv --model models/synSynth7.g
2025$PYTHON findSim.py ./Curated/FindSim-Ji2010_fig1C_ERK_acute.tsv --model models/synSynth7.g
2126$PYTHON findSim.py ./Curated/FindSim-Bhalla1999_fig4C.tsv --model models/synSynth7.g
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